Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01716 ATGGGTGGGTTGATGAAGTTGGCATGCGTGGCTGTGTTGTGCATGGCGTTGGTTGGTGCACCAGCGAAGGTTGAAGGGGTGTCATGCGCCCAAGTGATACAGAACCTGACCCCGTGCCTAAATTACCTGATGCAGGGTGGATCGCCTACGCAGAACTGCTGCAGCGGAGTGAAGAGCATTCTCGGCGCTGCCGGCACCACCGCCGACAAACAAACCGTGTGCAACTGTCTCAAGGATGCTGCTAACAGGTTTCCCATCAATGACAACAACGCTCAGGCACTCCCTGGCCTCTGCGGTGTCAGCGTCCCTTACAAGATCAGCCGCTCCACCAACTGCGCAGCCATTAGGTTCTGA 354 0.5678 MGGLMKLACVAVLCMALVGAPAKVEGVSCAQVIQNLTPCLNYLMQGGSPTQNCCSGVKSILGAAGTTADKQTVCNCLKDAANRFPINDNNAQALPGLCGVSVPYKISRSTNCAAIRF 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01716 117 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 28 114 IPR036312 -
Cca07g01716 117 Gene3D - 26 117 IPR036312 -
Cca07g01716 117 Pfam Probable lipid transfer 16 105 IPR016140 -
Cca07g01716 117 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 1 114 - -
Cca07g01716 117 ProSitePatterns Plant lipid transfer proteins signature. 94 115 IPR000528 GO:0006869|GO:0008289
Cca07g01716 117 CDD nsLTP1 27 112 - -
Cca07g01716 117 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Cca07g01716 117 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Cca07g01716 117 PRINTS Plant phospholipid transfer protein signature 69 84 IPR000528 GO:0006869|GO:0008289
Cca07g01716 117 PRINTS Plant phospholipid transfer protein signature 85 102 IPR000528 GO:0006869|GO:0008289
Cca07g01716 117 PRINTS Plant phospholipid transfer protein signature 103 114 IPR000528 GO:0006869|GO:0008289
Cca07g01716 117 PANTHER - 1 114 IPR000528 GO:0006869|GO:0008289
Cca07g01716 117 SMART aai_6 29 112 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01716 Cca-Chr7 43182980 43184648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01716 1 116 Acyl Lipid Metabolism Gene Families AT2G38540 44.068 5.74e-28 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01716 - - pvu:PHAVU_008G087100g 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01716 07 43182980 43184648 Cca01g01993 01 46562266 46564610 PCT