Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01589 ATGGGCGATTTCAACCtcgccctcgtcatcgtggcggtggtggtctgcgtcatcgtcttcctcgtcAATGTTTACCTCCTCGTCAACTACCAGCACCCCGACGACGCCAACCAGGCCTACTTCCCCAAATTCGTCGTCGTTTTCGGCCTCTCCGTCGCCGCAATCTCCATCCTCATGCTCCCCGCTGACGTCGCGAATCGCCAAGCGTGCCGCCACGCGATCTACAACGGCGCGTGCAACTTCACGCTCCCCATGAAGGACCTCTGGCTCGCCGTTTATATCCTCGACGCGGTTCTCGTCTTCTTTGTCATCCCCTTCGCCATGTTCTACTACGAGGGTGATCTGGACAAGACTGTGGGGAAGAGGGTTAAGAGTGCGTTGTTGTGGATGGTGACCACGGCGATAGTGTGCGCCCTCGTTTTGGGCATTTTATATGGGCTTGTTGGTAAGGTGGACTTCACTGTTAGGCATCTCTCTTCATCCACAACTTCATTTCCTAGCACATGGACATACAATAGTGGTGAACCATGTATTGGAAGTGGTGTCCATCAGTGCTCAGCATACTCCGCTAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTAGTTGCACTTGCTACCATTGTTGGATCTGTGCTTTTTGCTATATTTGGCGGTGTTGGTATTGCGTGTCTTCCATTAGGACTTATATTTTCATTTATTCGGCGTCCAAAGGCTGTTATCACTCGCTCACAGTATATCAAGGAAGCCACTGAACTGGGTAAAAAAGCAAGAGAACTAAAGAAAGCAGCCGAGGCACTCCGTCAGGAAGAAAAAAGTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGAAGTCGAGAAGGAGTTGTTTCAATTGGAAGAAGACGTAAAGCTTCTTGAAGAGATTTATCCACAAGGGGAAAAGGCTGAAACAACATGGGCACTAACAGTTCTTGGTTATCTGGCAAAACTTGTTTTGGGAGTTTTAGGGTTGATTGTTTCAGTGGCTTGGGTTGCTCATATTATTATCTACCTATTAATTGATCCTCCACTTTCTTCTTTCCTGAATGAAGTTTTCATCAAGCTAGATGATGTCTGGGGTCTTCTTGGCACTGCTGCATTTGCGTTTTTCTGCTTCTACCTTCTCCTTGCGGTTATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTCATTACTATACATCCCATGAAGTGGGGAGCAACTCTCATGAACTCTTTTCTCTTTAACGTGGGCCTTATTCTTCTTTGTTCCATTAGTGTGATCCAGTTTTGCTCCACAGCCTTTGCCTACTATGCTCAAGCAACTGCAGCCCAGGAAATATTTGGCCACACTTTGGAGTCTCTTCGAGGAATTAAATATTTGTACAAGTACAATGTCTTCCAAATTGCATTTGTTGTTTTGGCTGGATTGACTTTTGTGTATTACGCTGCCTTTGGATGGAGAAGAAAAAAGCCTAGTGACAGGTTCCAATTGTCTACATAA 1530 0.4412 MGDFNLALVIVAVVVCVIVFLVNVYLLVNYQHPDDANQAYFPKFVVVFGLSVAAISILMLPADVANRQACRHAIYNGACNFTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDLDKTVGKRVKSALLWMVTTAIVCALVLGILYGLVGKVDFTVRHLSSSTTSFPSTWTYNSGEPCIGSGVHQCSAYSASPSSEKTWTMRTTFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAAEALRQEEKSGSKGRKFRKNVKEVEKELFQLEEDVKLLEEIYPQGEKAETTWALTVLGYLAKLVLGVLGLIVSVAWVAHIIIYLLIDPPLSSFLNEVFIKLDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFAYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRKKPSDRFQLST 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01589 509 Coils Coil 256 279 - -
Cca07g01589 509 PANTHER BNAC05G43630D PROTEIN 1 508 - -
Cca07g01589 509 Pfam LMBR1-like membrane protein 9 293 IPR006876 -
Cca07g01589 509 Pfam LMBR1-like membrane protein 281 487 IPR006876 -
Cca07g01589 509 Coils Coil 283 310 - -
Cca07g01589 509 PANTHER LIMR FAMILY PROTEIN DDB_G0283707-RELATED 1 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01589 Cca-Chr7 40785094 40792825 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01589 K14617 - gmx:100816750 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01589 07 40785094 40792825 Cca01g01887 01 44167626 44175137 PCT