Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01887 ATGGGGGACTTCAACCTGGCGCTGGTGATCGTGGCGATCGTGGTGTGCGTGATCGTGTTCCTCGTCAACGTCTACCTCCTCGTTAACTACCAGCACCCCGACGACAAGAACCAGGCCTACTTCCCCAAATTCGTCGTCGTTTTGGGCCTCTCCGTCGCCGCCATCTCCATCCTCATGCTCCCCGCCGACGTCGCCAACCGCCAGGCCTGCCGCCACGCCATCTACAACGGCGCCTGCAGCCTCACGCTCCCCATGAAGGACCTCTGGCTCGCCGTCTACATCCTCGACGCGCTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAGGGCGACCTCGACAAGAGTGTTGGGAAGCGGGTTAAGAGCGCGTTGTTGTGGATGGTGACTACCGCGATTGTGTGCGCTCTTGTTCTGGGGATTTTGTATGGACTTATTGGGAAGGTGGACTTTACTGTTAGGCATCTCTCTTCTTCTACAAGCTCATTTCCTAGCACATGGGACTTCAATAGTGGTCAAGAATGTATTGGAACCAGTCATCAGTGTTCTGCATACACTGCTAGTCCCTCATCAGAGAAAACATGGACCATGCGTACTACTTTTCCAGAATATGTTGTTGCTCTTGCCACTATTGTTGGATCTGTGCTTTTTGCTATATTTGGTGGTGTTGGTGTTGCTTGTCTTCCATTGGGACTTATATTTTCATTCATTAGGCGTCCAAAGGCTGTTATCACTCGCTCACAGTATATCAAGGAAGCAACTGAACTTGGTAAAAAAGCAAAAGATCTGAAGAAAGCAGCTGAGTCACTTCAGCAGGAAGAAAGAAGTGGGTCGAAGGGTAGGAAATTTCGTAAAAATGTGAAATCGGTAGAGAAGGAGTTGCTTCAATTAGAAGAAGATGTCAACCTTCTTGAGGAGATGTATCCACAAGGGGAAAAGGCTGAGACAACATGGGCACTAACAGTTCTAGGGTATCTGGCAAAACTTGTTTTGGGAATTTTAGGGTTTATAGTTTCTGTGGCATGGGTGGCTCATATCATTATTTATCTATTAATTGATCCTCCTCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGCTTGATGATATCTGGGGTCTTCTGGGTACAGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGAGCCATGATGCTTGGGCTGAGACTAATTTTCATTACTATACATCCCATGAAATGGGGAGCAACTCTCATGAACTCTTTTCTGTTCAATGTGGGGCTTATCCTTCTATGTTCCATTAGTGTGATCCAGTTCTGCTCCACAGCATTTGCGTACTATGCTCAAGCAACTGCAGCACAGGAAATATTTGGCCACACCTTGGAGTCTCTTCGTGGAATTAAATATTTGTACAAGTACAACGTCTTTCAGATTGCATTTGTGGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTTGGATGGAGAAGAAAGAAGCCTAGTGGCAGGTTCGAATTGTCTACATGA 1527 0.4669 MGDFNLALVIVAIVVCVIVFLVNVYLLVNYQHPDDKNQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACSLTLPMKDLWLAVYILDALLVFFVIPFAMFYYEGDLDKSVGKRVKSALLWMVTTAIVCALVLGILYGLIGKVDFTVRHLSSSTSSFPSTWDFNSGQECIGTSHQCSAYTASPSSEKTWTMRTTFPEYVVALATIVGSVLFAIFGGVGVACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKAKDLKKAAESLQQEERSGSKGRKFRKNVKSVEKELLQLEEDVNLLEEMYPQGEKAETTWALTVLGYLAKLVLGILGFIVSVAWVAHIIIYLLIDPPLSPFLNEVFIKLDDIWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLIFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFAYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVALAGLTFVYYAAFGWRRKKPSGRFELST 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01887 508 Coils Coil 255 275 - -
Cca01g01887 508 Pfam LMBR1-like membrane protein 9 281 IPR006876 -
Cca01g01887 508 Pfam LMBR1-like membrane protein 283 486 IPR006876 -
Cca01g01887 508 Coils Coil 282 309 - -
Cca01g01887 508 PANTHER BNAC05G43630D PROTEIN 1 507 - -
Cca01g01887 508 PANTHER LIMR FAMILY PROTEIN DDB_G0283707-RELATED 1 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01887 Cca-Chr1 44167626 44175137 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01887 K14617 - gmx:100796998 931.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01589 07 40785094 40792825 Cca01g01887 01 44167626 44175137 PCT