Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01556 ATGTTCGATCACCGAGTGCTTAAACGTGCCAAGATATCTATCTTCTCTCTAATCACATTCTCGGCTATAATTTTTCTCCTTCATTATGATCTTATCTACCACGATTCCGTGAACCCTGCGGCAAACAAAGGAGCACTAGATGTGTTGCAAGCTCACACTCACAAATATGGAGAAGGGATGAGGTCAACTCTTAGTCTTATTCACACATCTTTACGTTCCATGAAAGAAGAGAATGAAGGAGTTGGTAAAGGAAATCATAGAGTACTAGTTGCTCCACTTAATGCCACTGAAGAAGAAAGAATTGCTTGGTTTAGAGGGAAGCTTCATGAGTTTAAGATTCTTATATCAGATGAGTTGAGTAGGAAATTCCATGCTCGGGTTCTTGGATTTTTCAGCCATGAATGTGAGTCTCAAATTTTCATGACTTGGGTGTCCCCTGCAGGCTCATTTGGAGCAAGGGAATTGTTGTCTGTTGAGAGTCTTTTCAAGGTGCAACCCAAGGCATGCTTGGTGATTCTATCAAGGACTTTGGACTCAATTCATGGCTATAGGATCCTAAAGCCATTTCTTTATGGGGGGTTCAAAGTTCAAGCAGTGACCCCAGACTTGCCATATCTGTTCAAGGGGACTACTGCTGAATCATGGTTGAATGAGTTGAGGAAAGGGAACAAGGACCCTGGTGAGATTTCTCTGTTTCAGAATCTATCTAACTTGATGAGACTTGCAGTTTTGTACAAATATGGTGGCGTCTACCTAGACACAGATTTTATTGTCTTGAAGCCTTTAACTGGGTTGAGGAATTCTATTGGAGCACAAAGCATGGATCTTGGTAATAAGCACTGGACCAGACTGAACAATGCAGTTCTGATATTTGACTTGAACCATCCACTTCTTCTCAGATTCATCAATGAGTTTGTGTTGACTTTTGATGGGAACAAATGGGGGCATAATGGTCCCTACCTGGTTTCAAGAGTGGTTGAGAGACTGGGGAAAAGGCCAGGAGTCAACTTCACAATCTTGCCTCCTAAGGCCTTTTATCCAGCAGATTGGAAAAAGATTGGTGGTCTCTTTAGGAAGCCAAAAGCTAGAGGTGAATCAAAATGGGTTGAGGCCAAACTGCTTCAGCTTAGTAGTGAGACTTATGGGGTGCATCTGTGGAACAAAGAAAGTAAGAGATTAGAGATTGAAGAAGGAAGTGTCATAGCAAGACTTGTATCTGATCACTGTGTCATTTGCAACTTTATGTAA 1248 0.4175 MFDHRVLKRAKISIFSLITFSAIIFLLHYDLIYHDSVNPAANKGALDVLQAHTHKYGEGMRSTLSLIHTSLRSMKEENEGVGKGNHRVLVAPLNATEEERIAWFRGKLHEFKILISDELSRKFHARVLGFFSHECESQIFMTWVSPAGSFGARELLSVESLFKVQPKACLVILSRTLDSIHGYRILKPFLYGGFKVQAVTPDLPYLFKGTTAESWLNELRKGNKDPGEISLFQNLSNLMRLAVLYKYGGVYLDTDFIVLKPLTGLRNSIGAQSMDLGNKHWTRLNNAVLIFDLNHPLLLRFINEFVLTFDGNKWGHNGPYLVSRVVERLGKRPGVNFTILPPKAFYPADWKKIGGLFRKPKARGESKWVEAKLLQLSSETYGVHLWNKESKRLEIEEGSVIARLVSDHCVICNFM 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01556 415 Pfam Alpha 1,4-glycosyltransferase conserved region 291 412 IPR007652 -
Cca07g01556 415 Gene3D - 171 337 - -
Cca07g01556 415 PANTHER ALPHA 1,4-GLYCOSYLTRANSFERASE FAMILY PROTEIN 1 413 IPR044789 -
Cca07g01556 415 PANTHER ALPHA 1,4-GLYCOSYLTRANSFERASE FAMILY PROTEIN 1 413 - -
Cca07g01556 415 Pfam Glycosyltransferase sugar-binding region containing DXD motif 153 273 IPR007577 -
Cca07g01556 415 SUPERFAMILY Nucleotide-diphospho-sugar transferases 101 413 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01556 Cca-Chr7 40217526 40218905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01556 7 412 Glycosyltransferase AT2G38150 49.140 7.68e-139 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01556 K01988 - gmx:100812965 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01556 07 40217526 40218905 Cca07g01556 07 40217526 40218905 ECH
Cca07g01556 07 40217526 40218905 Cca01g01857 01 43384084 43385319 PCT