Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01857 ATGATTCCCTACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCTACACTCTGCAGCTGGTACAGAAGCACCAAAGAAGTTGCCATCTCACAATCACATAACAAAGGAAGGAATAAGGTCAACACTTGTTCACATACCTTTACGTTCCATTCAAGAGAAGGATGAAACTGATAGTCGAAACCAGAATGCTCTAGTTGCCCCATTCAATGCCACAGAAGAAGAAAGAATAGCTTGGTTTCGAGAACAGCTGCATAACTTCAAGATTCTCAAGTCAAACAATTTGACACGACAATTTCATGCTCGAGTTTTGGGATTTTTCAGCCAGGAATGTGAGGCTCAGTTTTTCATGACTTGGATTTCACCTGCAAGCTTATTTGGAGGGAGAGAATTGCTGTCTGTGGAAAGCGTTTTCAAGAACCATCCTAAGGCATGTATAATAATTTTATCAAGAACTTTGGACACCAGACATGGCTACAGAATCCTGAAACCACTGCTTGATCACGGGTTCAAAGTGCAGCCAATAGCCCCAGACTTGCCATTTTTGTTCAAGAGGACTCCAGCTGAAGCTTGGTTTCATGAGTTGAAGAAGGGTAGAAAGGATCCTGGTGAGATTCCCTTGTCTCAGAATCTATCTAATCTGATAAGACTTGCAGTTCTCTACAAATATGGCGGTGTCTACATAGATGCAGATTTTATAGTTCTTAAACCCTTAACAGGGTTAAGGAATTCTATTGGTGCACAAAGCATGAATTTGGATTCTAAGCACTGGACCAGATTAAATAATGCAGTTCTGATTTTTGATAGGAGACATCCACTTCTGCATAGATTCATCAGCGAATTTTCGTCGACTTTTGATGGAAATAAATGGGGGCACAACGGTCCCTACTTGGTTTCCAGAGTGATTAAAAGGCTGGGGAAAAGGCATGATTTCAACTTTACAATCTTGCCTCCTATGGCCTTTTATCCAGTGGACTGGAACAAGATAAGTGGGTTATTTACAAAGCCAGAAACTTTGGAAGAATCAAGATGGGTAGAAGCCAAACTGCTTCAGCTCAGAGGGAAGACTTATGGGATTCATCTATGGAACAAACATAGTAACAGATTGAGAATTCAAGAAGGAAGCGTCATAGGAAGACTTGTATCAGATTACTGTGTCATTTGCAACCATAAATACAGTTCTTAG 1236 0.3827 MIPYXXXXXXXXXXXXXXXXXXXXXXXXXXXSLHSAAGTEAPKKLPSHNHITKEGIRSTLVHIPLRSIQEKDETDSRNQNALVAPFNATEEERIAWFREQLHNFKILKSNNLTRQFHARVLGFFSQECEAQFFMTWISPASLFGGRELLSVESVFKNHPKACIIILSRTLDTRHGYRILKPLLDHGFKVQPIAPDLPFLFKRTPAEAWFHELKKGRKDPGEIPLSQNLSNLIRLAVLYKYGGVYIDADFIVLKPLTGLRNSIGAQSMNLDSKHWTRLNNAVLIFDRRHPLLHRFISEFSSTFDGNKWGHNGPYLVSRVIKRLGKRHDFNFTILPPMAFYPVDWNKISGLFTKPETLEESRWVEAKLLQLRGKTYGIHLWNKHSNRLRIQEGSVIGRLVSDYCVICNHKYSS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01857 411 Gene3D - 129 334 - -
Cca01g01857 411 SUPERFAMILY Nucleotide-diphospho-sugar transferases 87 409 IPR029044 -
Cca01g01857 411 Pfam Alpha 1,4-glycosyltransferase conserved region 284 407 IPR007652 -
Cca01g01857 411 Pfam Glycosyltransferase sugar-binding region containing DXD motif 146 266 IPR007577 -
Cca01g01857 411 PANTHER ALPHA 1,4-GLYCOSYLTRANSFERASE FAMILY PROTEIN 46 411 IPR044789 -
Cca01g01857 411 PANTHER ALPHA 1,4-GLYCOSYLTRANSFERASE FAMILY PROTEIN 46 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01857 Cca-Chr1 43384084 43385319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01857 73 407 Glycosyltransferase AT2G38150 52.976 3.46e-134 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01857 K01988 - gmx:100781975 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01857 01 43384084 43385319 Cca01g01857 01 43384084 43385319 ECH
Cca07g01556 07 40217526 40218905 Cca01g01857 01 43384084 43385319 PCT