Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01539 ATGAAAGCCATTGCAATCACTATAAATCCCTCACTCTCTCCTCCCTTTTGTTCATCTCCCACTACCCCTCCTTCTTCTTCTTCACACCCTGCTAGATTTCAACGTTTCCACACGTCAGGAGCAAACCCCATTACTCTTTCATGCAGAGGAGCACGGTTGTGCTCTTTGCAGGGGTCAAAAGCTCTAAGGGGTGGAAAAAGTTTGGTGCTTGAGGCTGGAAAGGTGACCATGGCAGAGGTTGATTCTCGTGGAGAGGGGGAGAACGAGGGTGCTTTGCTTGGCTCCGAGAATGAGAACAATTCAAGGCCTAGAAGAATTGCTCTCTTTGTTGAGCCTTCTCCCTTTGCATATGTCTCAGGATACAAAAACCGGTTTCAGAACTTTATTAGATGCCTTCGTGAAATGGGAGATGAGGTGATGGTTGTGACAACACATGAAGGAGTGCCCCAGGAATTTCATGGAGCTAAATTAATCGGATCTTGGAGCTTTCCCTGCCCTTGGTATCAGAAGGTACCCCTCTCTTTGGCACTTAGTCCAAGAATAATTTCAGAGGTAGCCCGGTTTAAGCCTGACATCATACATGCATCATCACCAGGCATAATGGTTTTTGGTGCTCTTATCATTGCAAAGCTTTTGTGTGTTCCTATTGTCATGTCCTATCACACGCATGTACCTGTGTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCTATGTGGTTGGTCATAAAATTTCTTCACAGAGAAGCTGATCTGACTCTGGTACCATCAGCTGCCATTGCAAGGGATCTCCAAGCTGCTAGGGTCACAGCAGCTAACAAGATTCGTCTTTGGAACAAGGGTGTTGATTCTGAAAAATTCCACCCTCAATACCGATCCCATGAAATGCGATTAAGACTAAGCAATGGTGAACCTGAGAAACCCTTGATAGTTCATGTTGGACGGCTTGGAGTAGAGAAGAGTTTAGATTTCCTCAAAAGGTACCTCATGGAAAGGCTTCCTGAAGCCCGAATTGCTTTCATTGGTGATGGGCCATACAGGGAGGAGCTAGAGAAAATGTTTGAAGGTATGCCTGCAGTATTCACTGGAATGTTAGGAGGGGAAGAACTTTCCCAAGCATATGCCAGTGGAGACGTATTTGTGATGCCTTCAGAGTCAGAGACACTTGGTCTTGTAGTCTTGGAGGCCATGTCTTCTGGGATACCTGTGGTGGCAGCACGTGCCGGCGGTATTCCCGATATAATCCCTGAAGATCAAGATGGTAAAACTAGTTATCTGTACACTCCAGGAGATCTTGAAGATTGCTTGAGTAAACTAAGGCCCCTTTTGCTCAACAAAGTGTTGAGAGAAGCCATGGGAAAAGCTGCACGCGAAGAGATGGAGAAGTATGATTGGAAGGCAGCCACCAGGAAGATTCGCAATGAACAATACAATGCTGCCATTTGGTTCTGGCGCAAGAAAAGAGCTCAACTTTTGAGACCCTTGCAATGGCTGGCTAAACGTGTTTTTCCATCACCACAAGTCAACTACAGGTGA 1539 0.4594 MKAIAITINPSLSPPFCSSPTTPPSSSSHPARFQRFHTSGANPITLSCRGARLCSLQGSKALRGGKSLVLEAGKVTMAEVDSRGEGENEGALLGSENENNSRPRRIALFVEPSPFAYVSGYKNRFQNFIRCLREMGDEVMVVTTHEGVPQEFHGAKLIGSWSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHREADLTLVPSAAIARDLQAARVTAANKIRLWNKGVDSEKFHPQYRSHEMRLRLSNGEPEKPLIVHVGRLGVEKSLDFLKRYLMERLPEARIAFIGDGPYREELEKMFEGMPAVFTGMLGGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVAARAGGIPDIIPEDQDGKTSYLYTPGDLEDCLSKLRPLLLNKVLREAMGKAAREEMEKYDWKAATRKIRNEQYNAAIWFWRKKRAQLLRPLQWLAKRVFPSPQVNYR 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01539 512 PANTHER SULFOQUINOVOSYL TRANSFERASE SQD2 21 511 - -
Cca07g01539 512 Gene3D Glycogen Phosphorylase B; 310 469 - -
Cca07g01539 512 MobiDBLite consensus disorder prediction 13 33 - -
Cca07g01539 512 Pfam Glycosyl transferases group 1 309 444 - -
Cca07g01539 512 CDD GT4-like 105 478 - -
Cca07g01539 512 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 106 474 - -
Cca07g01539 512 Pfam Glycosyltransferase Family 4 123 286 IPR028098 -
Cca07g01539 512 Gene3D Glycogen Phosphorylase B; 105 305 - -
Cca07g01539 512 PANTHER GROUP 1 FAMILY GLYCOSYLTRANSFERASE 21 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01539 Cca-Chr7 39826815 39831711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01539 52 427 Glycosyltransferase AT5G01220 75.532 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01539 K06119 - gmx:100807850 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01539 07 39826815 39831711 Cca07g01539 07 39826815 39831711 ECH
Cca07g01539 07 39826815 39831711 Cca01g01836 01 42854630 42860981 PCT