Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01263 ATGGCTCATGTTTCAGATGCAGCTTATTCTGAAAAAGCCCAGAAAGGTCAACCTGGTCCAATGATGATTAATCCAAATGAGCCCAAGGAACATTCAGATCTAGTTTCTTCTGCTGACCCACCCCCTTCAAAACCCAGAGTTCATTCAGAGGATCAATCTGGAAAGGGATCAGTGAGATCAACAAATGAGTTACAAAAGAGCAGGGAGGATGGTGATCCTAGACATTTTGTTGACTCTCCAGCTCACCATGGTAGCAGTGATTCTGCCCATCGAGGCCAGGGAGTAGGTTCTGCTGACAGCCGTAGAAAACCTTCAAGACAAAGTACTGGGTCTGAACATATTGACCGTTCACCCCTTCATCGCCATGCAAAAACCCCTGGCAGAGATAGTCCATCTTGGGAAGGAAAAAATTCACATGACAGCGGCCATGGTACACCTGGAATATCCCGATTAAGACCATCAAACCGAGGGGATGAAACTCCTGATAAAGGTGCTGCTGTTCCGAAGTTTGGTGAGTGGGATGAAAGTAACCCTACATCAGGTGATGGCTATACTCACATTTTCAACGTATTGAGGGAGGAGAAACAGGTGGGAGCTGGACACGTGCCAGGCACGCCTAATGGGAGACAATATGCTGCTCGGAACCAACCTGCTGACAACAAAGCTCAGAGCTGCTGCTTTTGCTGGGGGAAAAAGTGA 699 0.4764 MAHVSDAAYSEKAQKGQPGPMMINPNEPKEHSDLVSSADPPPSKPRVHSEDQSGKGSVRSTNELQKSREDGDPRHFVDSPAHHGSSDSAHRGQGVGSADSRRKPSRQSTGSEHIDRSPLHRHAKTPGRDSPSWEGKNSHDSGHGTPGISRLRPSNRGDETPDKGAAVPKFGEWDESNPTSGDGYTHIFNVLREEKQVGAGHVPGTPNGRQYAARNQPADNKAQSCCFCWGKK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01263 232 MobiDBLite consensus disorder prediction 155 169 - -
Cca07g01263 232 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 4 229 IPR040387 -
Cca07g01263 232 MobiDBLite consensus disorder prediction 198 217 - -
Cca07g01263 232 MobiDBLite consensus disorder prediction 1 181 - -
Cca07g01263 232 MobiDBLite consensus disorder prediction 62 85 - -
Cca07g01263 232 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 161 196 IPR008700 -
Cca07g01263 232 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE-RELATED 4 229 - -
Cca07g01263 232 MobiDBLite consensus disorder prediction 105 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01263 Cca-Chr7 32249613 32255574 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01263 K13456 - gmx:100499219 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01263 07 32249613 32255574 Cca01g01252 01 21499836 21505554 PCT