Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01252 ATGGCACAACGCTCTCATGTACCCAAATTTGGCAACTGGGATAGTGGAGATAATGTTCCTTATACAGCATATTTTGACAAGGCCCGGAAAGGTAGAACTGGCGCAAGGATAATAAACCCAAATGACCCTGAGGAAAATTCAGATTTAAGTGCTGAGAATCTATCATCTGATCAACTACCTCCTTCCAAACCCAGAGTATTTTCAGAGGATCCACCCAGAAAGGTGTCACTGCATTCAGAGGATGACCCTAAGCATTTCATAGACTCTCCAGCTCGTCATGACAATGCAGGCAGTAGAAGTGGCAGCAGAAGCCATGGTGTAGGTTCCGCTGAGAACCGTAGAAGACCTTCAACGCAAAGCACTGGTTCTGAGTTCAGCATTGACCGTTCGCCGCTTCATCGCCAGGCTAGAGCCCCAGGCCGAGACAGTCCCCAATGGGAAGGGAAGAATTCTTATGAAAGCAGCCAGGGAACACCAGGGAGATCTCGGTTCAAACCTCGGGGAGATGAAACACCTGATAAAGGTGCAGCTGTTCCAAAGTTTGGTGATTGGGATGTGAATAACCCAGCATCAGCTGATGGCTTTACTCACATTTTCAATAAAGTGAGGGAGGAGAAACAAGGTGGGCCAGGACAAGTGCAAGGCACGCCAGAGAGACCACAAGTTATCAGGGGCAAACCTACCAATGACAAAGTCCAGTGTTGCTGCTTTGGGTGGGGCAAAAATTGA 729 0.4829 MAQRSHVPKFGNWDSGDNVPYTAYFDKARKGRTGARIINPNDPEENSDLSAENLSSDQLPPSKPRVFSEDPPRKVSLHSEDDPKHFIDSPARHDNAGSRSGSRSHGVGSAENRRRPSTQSTGSEFSIDRSPLHRQARAPGRDSPQWEGKNSYESSQGTPGRSRFKPRGDETPDKGAAVPKFGDWDVNNPASADGFTHIFNKVREEKQGGPGQVQGTPERPQVIRGKPTNDKVQCCCFGWGKN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01252 242 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 239 IPR040387 -
Cca01g01252 242 MobiDBLite consensus disorder prediction 147 161 - -
Cca01g01252 242 MobiDBLite consensus disorder prediction 67 92 - -
Cca01g01252 242 MobiDBLite consensus disorder prediction 43 62 - -
Cca01g01252 242 MobiDBLite consensus disorder prediction 95 128 - -
Cca01g01252 242 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 32 IPR008700 -
Cca01g01252 242 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 172 207 IPR008700 -
Cca01g01252 242 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE-RELATED 1 239 - -
Cca01g01252 242 MobiDBLite consensus disorder prediction 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01252 Cca-Chr1 21499836 21505554 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01252 K13456 - gmx:100499218 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01263 07 32249613 32255574 Cca01g01252 01 21499836 21505554 PCT