Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01160 TCGGAGAAGCGCGTGGCGTCGGGGTGCTGGGTGCAGGTGTTCGGAAACGGCGACGTTTACGAGGGGGAGTTTCACCGAGGGAAGTGTTCGGGGAGTGGAGTGTATTATTATAGTAGGAGTGGGAGGTACGAGGGGGATTGGGTCGATGGCAAGTATGATGGCTATGGGGTTGAGACTTGGGCACGTGGGAGTCGCTACCGTGGGTGTTACCGCCAGGGCCTGAGGCACGGCTTTGGCGTATATAGGTTTTACACCGGGGATGTCTACGCCGGAGAGTGGTCTAATGGTCAGAGCCATGGGTATGGGGTTCACACGTGCGAGGATGGGAGTAGGTACGTTGGGGAGTTCAAATGGGGTGTTAAGCATGGCCTTGGTCATTACCATTTCAGAAACGGGGATACATATGCGGGTGAATACTTCGCGGACAAGATGCATGGTTTTGGCATATATCGTTTTGCGAATGGACATCGTTATGAAGGAGCCTGGCATGAAGGCAGAAGGCAAGGACTTGGAATGTATACATTTAGAAATGGTGAAACCCAATCTGGTCACTGGCAAAATGGAGTCCTTGACATTCCAAGCACACAGAACACCACCTATCCAGTTTCTCCTGTTGGCGTCTATCATTCCAAAGTACTCAATGCAGTGCAGGAAGCAAGACGAGCAGCAGAGAAAGCTTATGATGTGGCTAAGGTAGATGAAGGGGTGAACAGAGCTGTAGCAGCTTCTAATAGAGCAGCCAATGCAGCTAGGGTAGCTGCTGTGAAGGCTGTGCAAAAGCAGATGCATCATGTTAACAATGAAAGCTTCTCTATTCCCGTTATTCTCAAGAAGGACCAAGGTTTTGTTGCTGCATCAGTTCCTAGAACTGATCTTGCTGCTGCTGGACCAGCCTATGGTGCTACACCTGTTTCGGGTGCTGCTGCAGCTTCTAGAGCTGCTTTTGGTTCTGTTTTCTCAGTCAGAATGGGACTTCCAAGGAAGCTGCACGTTCTGTTAGAACTGCAACAGTTCTTAGAGCTGATGGGAATGAACAAGTTTTGGGTGATGCAGTACATTCTGGTGCTAGTCATGGTTCCACTGCAAAATCCCGGGTTCAAAATGTACCTGTGCCGCCCTCTAAGCAGGATCAGTGCAAACGAGTCTCCAGAAAAGCAGGGACTTGTTAATGATCCAATGGCTGAATCTGACCCTGTCAAGCATGCTTGGAGCAATCAGTTGGATCAGCTTCGTGCTACCACAAGAGCATATTCCTGA 1257 0.4988 SEKRVASGCWVQVFGNGDVYEGEFHRGKCSGSGVYYYSRSGRYEGDWVDGKYDGYGVETWARGSRYRGCYRQGLRHGFGVYRFYTGDVYAGEWSNGQSHGYGVHTCEDGSRYVGEFKWGVKHGLGHYHFRNGDTYAGEYFADKMHGFGIYRFANGHRYEGAWHEGRRQGLGMYTFRNGETQSGHWQNGVLDIPSTQNTTYPVSPVGVYHSKVLNAVQEARRAAEKAYDVAKVDEGVNRAVAASNRAANAARVAAVKAVQKQMHHVNNESFSIPVILKKDQGFVAASVPRTDLAAAGPAYGATPVSGAAAASRAAFGSVFSVRMGLPRKLHVLLELQQFLELMGMNKFWVMQYILVLVMVPLQNPGFKMYLCRPLSRISANESPEKQGLVNDPMAESDPVKHAWSNQLDQLRATTRAYS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01160 418 Gene3D - 50 94 - -
Cca07g01160 418 Gene3D - 95 140 - -
Cca07g01160 418 Gene3D - 2 49 - -
Cca07g01160 418 Gene3D - 141 208 - -
Cca07g01160 418 SMART morn 156 177 IPR003409 -
Cca07g01160 418 SMART morn 87 108 IPR003409 -
Cca07g01160 418 SMART morn 133 154 IPR003409 -
Cca07g01160 418 SMART morn 64 85 IPR003409 -
Cca07g01160 418 SMART morn 18 39 IPR003409 -
Cca07g01160 418 SMART morn 41 62 IPR003409 -
Cca07g01160 418 SMART morn 110 131 IPR003409 -
Cca07g01160 418 MobiDBLite consensus disorder prediction 381 400 - -
Cca07g01160 418 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 2 267 - -
Cca07g01160 418 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 63 188 - -
Cca07g01160 418 Pfam MORN repeat 20 38 IPR003409 -
Cca07g01160 418 Pfam MORN repeat 66 88 IPR003409 -
Cca07g01160 418 Pfam MORN repeat 135 157 IPR003409 -
Cca07g01160 418 Pfam MORN repeat 112 134 IPR003409 -
Cca07g01160 418 Pfam MORN repeat 158 179 IPR003409 -
Cca07g01160 418 Pfam MORN repeat 89 111 IPR003409 -
Cca07g01160 418 Pfam MORN repeat 43 65 IPR003409 -
Cca07g01160 418 PANTHER - 2 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01160 Cca-Chr7 28451576 28458569 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01160 16 248 Acyl Lipid Metabolism Gene Families AT2G41210 25.214 3.58e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01160 - - ccaj:114916375 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01517 01 32848112 32854430 Cca07g01160 07 28451576 28458569 PCT