Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01517 ATGCATCAAAAGAAATCCGAAGCCCAGATCGGAAAAGAAAGCACCGGCGTCTCTTCCGATTTCAATCCCAACCAAATCCAAACCCTCTCTCTCCAATCACTCACCTACAAGCGCCCTCTGCTCAAATCCCCAACGCTCTACAAATTCCCAACCCCACCGCCACCGCCTCCGCCGCCGCCGCCGCGCTCCTCCGCCGTCAATCGCATCCTCTCCCACCGCCGCCGCCGCCTCATCCTCCTCCTCGCTCTCCCCTTCCTCTACTTCCTCGTCTCGCACCCGACCAGCTCCCTCCTGCTCGACCTCCCGTCGGCCTTCCTCTTCTCCGCCGCGCTCCTGCTCTCGCTTAACCTCCGCCTGCCCTCGCTGCGCCTCCTCCTCACGCTCAAGCCCGCCgcgcggcccaagctccgcctgcccgtgttccgggccggcccgtcccggcccgCGGGGCTCTCGGTGGCGGCGTACGCGAACGGGGACGTGTACGAGGGGGAGGTGAAGGGGGGGAAGTGCTCCGGGAGTGGGGTGTACTACTACAGCATGAGTGGGAGGTACGAGGGGGAGTGGGCCGAGGGGAAGTACGATGGGCTTGGCGTGGAGACGTGGGCCCGCGGGAGCAGGTACCGCGGGCAGTACCGGCTTGGGCTCAGGCATGGGTTTGGTGTGTATAGGTTCTACACTGGGGATGTTTATGCTGGGGAATGGGCCAGTGGGCAGAGCCATGGCTGTGGGGTGCACACGTGCGAGGATGGGAGTAGGTACGTGGGGGAGTTCAAGTGGGGCGTTAAGCATGGCCTTGGACACTACCATTTTAGAAACGGGGATACATATGCTGGTGAATACTTTGCGGATAAAATGCATGGTTTTGGGGTATATAGTTTTGCAAATGGCCATTGTTATGAAGGATCCTGGCATGAAGGCAAAAGGCAAGGTCTTGGAATGTATACATTTAGAAATGGAGAAACCCAGTCTGGTCACTGGCAAAATGGAGTCCTTGACATTCCGAGCACACAGAGCACTACCTATCCTGTTTCTCCTGTTGGCGTCAATCATTCCAGAGTACTTAATGCAGTGCAGGAAGCAAGAAGAGCAGCTGAGAAGGCCTATGATGTGGCCAAGGTAGATGAAAGGGTGAATAGAGCAGTAGCAGCCGCTAACAGAGCAGCCAATGCAGCTAGAGTAGCTGCTCTCAAGGCTGTGCAAAACCAAATGCATCATAATGTTAACAGCAAGAGCATCCCGATTCCCATTGTGTGA 1257 0.5426 MHQKKSEAQIGKESTGVSSDFNPNQIQTLSLQSLTYKRPLLKSPTLYKFPTPPPPPPPPPPRSSAVNRILSHRRRRLILLLALPFLYFLVSHPTSSLLLDLPSAFLFSAALLLSLNLRLPSLRLLLTLKPAARPKLRLPVFRAGPSRPAGLSVAAYANGDVYEGEVKGGKCSGSGVYYYSMSGRYEGEWAEGKYDGLGVETWARGSRYRGQYRLGLRHGFGVYRFYTGDVYAGEWASGQSHGCGVHTCEDGSRYVGEFKWGVKHGLGHYHFRNGDTYAGEYFADKMHGFGVYSFANGHCYEGSWHEGKRQGLGMYTFRNGETQSGHWQNGVLDIPSTQSTTYPVSPVGVNHSRVLNAVQEARRAAEKAYDVAKVDERVNRAVAAANRAANAARVAALKAVQNQMHHNVNSKSIPIPIV 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01517 418 MobiDBLite consensus disorder prediction 1 24 - -
Cca01g01517 418 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 249 333 - -
Cca01g01517 418 Pfam MORN repeat 185 207 IPR003409 -
Cca01g01517 418 Pfam MORN repeat 208 230 IPR003409 -
Cca01g01517 418 Pfam MORN repeat 162 182 IPR003409 -
Cca01g01517 418 Pfam MORN repeat 254 276 IPR003409 -
Cca01g01517 418 Pfam MORN repeat 231 253 IPR003409 -
Cca01g01517 418 Pfam MORN repeat 300 321 IPR003409 -
Cca01g01517 418 Pfam MORN repeat 277 298 IPR003409 -
Cca01g01517 418 MobiDBLite consensus disorder prediction 45 65 - -
Cca01g01517 418 PANTHER - 85 408 - -
Cca01g01517 418 SMART morn 183 204 IPR003409 -
Cca01g01517 418 SMART morn 252 273 IPR003409 -
Cca01g01517 418 SMART morn 275 296 IPR003409 -
Cca01g01517 418 SMART morn 229 250 IPR003409 -
Cca01g01517 418 SMART morn 298 319 IPR003409 -
Cca01g01517 418 SMART morn 206 227 IPR003409 -
Cca01g01517 418 SMART morn 160 181 IPR003409 -
Cca01g01517 418 MobiDBLite consensus disorder prediction 46 64 - -
Cca01g01517 418 MobiDBLite consensus disorder prediction 10 24 - -
Cca01g01517 418 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 156 261 - -
Cca01g01517 418 Gene3D - 192 236 - -
Cca01g01517 418 Gene3D - 283 347 - -
Cca01g01517 418 Gene3D - 237 282 - -
Cca01g01517 418 Gene3D - 145 191 - -
Cca01g01517 418 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 85 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01517 Cca-Chr1 32848112 32854430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01517 155 333 Acyl Lipid Metabolism Gene Families AT1G60890 37.989 1.80e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01517 - - gmx:100784010 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01517 01 32848112 32854430 Cca07g01160 07 28451576 28458569 PCT