Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00538 ATGAAGACGGGGAGAGATAGAGATGCATCTTTCTCATCCTATCTCAGACCCGATGACAAGGTAACAATCACTGGTGAAGACTCCACCACTGAGCTTAGCATATTCGATGCTCACAAATACTTCAATGATGACAACAACAACAACGTGCAAAAAGTTAGCATCAGCAGAGTCTCTCCCATGGAAAGAATTCCAGAGAGGGGTGACGTCATCATGACAGAAGCCACCAGATACTCCTCTGCTTCATCCTCAGTGGATGGCTTCGCCCACATCAGAAACTACAGAGCGCGTTCGTTCCATGCAGCAACTCCAACGGCTTCCTCAGAAGCCAGCTGGAACAGCCAAACAGGGTTGCTATCTCACCCTCCAGGAGCAATCCCTGTCTCAATCAGAAACCCTCAAAACCCTAAAAACCCTAAACTCTCCAATCCGAAACCGATTTGGAGGAGAAAATGTCCATGCACGGGGAGAAAATCAGTTCAAGTCAAAGAATCAACGCAAGGATCCAAATCCAACACACCACCGCTAGATCACGAACATGTAAACGTTCGTAATCACATCACACCGAATAACTGGATTGTGAATCAAACACCAGCTCCGGCGACAGCAACAGCAACAATTGTCGCTGCGAAATCGCAACGATTTCACAACGCTAACACTCACAGAGTCGTGAGCTCCGGGAGAGCGCCGTTCACCGACGGATTCACTTTCCCCGTGCTAAACCCTAACAATCCAATCACGAAACCGAATCTCGCAAACGGCGTCGTCGAGGAAGATCCGCCGCGCGACTCGCTGGAGGTCTTCCGGCCGCCGGACGAGTCGTCGCCGAATCCGTCTCCGAAGCCGCCGCCGCTGAACTTCCCGTTCCCGGCGAAGCCGCGCGGCGTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCGCGAGCGACGCGAGCTCCGATCTCTTCGAGATCGAGAGCTTCTCGACGGCGACGCAGTCGACGTACCCGGCGGCGTGCCGGCGCAACAGCAGGGACTCGTTCGACGAGGCCTCGGCGTCGACCTCGACCGCGACGACCACGACGGGATTCTTCTTCGGTCGGAGAAGCATGGACGAGGGCTCGACGACGGCGACGATAACGGAGTGCTACGAGCCGAGCGAGGCGAGCATCGAGTGGAGCGTGACGACGGCGGAGGGGCACGAGGAGGGCGTCTCGGCCGCGGAGGAGAAGTGGAAGCGCAAAGGCGGGAACGGTTTGTTGGTGAGCTGTCGGTGCGAGAAAGCGGTTAGCGTGGGGCCGCAGCCGGTGAAATGTGGATCAGAGGGACAGCGGAGTGCCACGTCAGCATCCGCATCAGCGCACGTGAATGTAACTTCCCTTAGTGGGGTTCACAGTAGGATTGGGAGCATTAATAAGCCACCACTTGCGAGGGCTCACCGCAACGCACCTCGCGTGTCCCTTGCTTTCGCCACATAG 1548 0.52 MKTGRDRDASFSSYLRPDDKVTITGEDSTTELSIFDAHKYFNDDNNNNVQKVSISRVSPMERIPERGDVIMTEATRYSSASSSVDGFAHIRNYRARSFHAATPTASSEASWNSQTGLLSHPPGAIPVSIRNPQNPKNPKLSNPKPIWRRKCPCTGRKSVQVKESTQGSKSNTPPLDHEHVNVRNHITPNNWIVNQTPAPATATATIVAAKSQRFHNANTHRVVSSGRAPFTDGFTFPVLNPNNPITKPNLANGVVEEDPPRDSLEVFRPPDESSPNPSPKPPPLNFPFPAKPRGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASDASSDLFEIESFSTATQSTYPAACRRNSRDSFDEASASTSTATTTTGFFFGRRSMDEGSTTATITECYEPSEASIEWSVTTAEGHEEGVSAAEEKWKRKGGNGLLVSCRCEKAVSVGPQPVKCGSEGQRSATSASASAHVNVTSLSGVHSRIGSINKPPLARAHRNAPRVSLAFAT 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00538 515 MobiDBLite consensus disorder prediction 240 340 - -
Cca07g00538 515 MobiDBLite consensus disorder prediction 160 175 - -
Cca07g00538 515 Coils Coil 295 295 - -
Cca07g00538 515 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 1-RELATED 6 504 IPR039615 GO:0009638
Cca07g00538 515 MobiDBLite consensus disorder prediction 160 179 - -
Cca07g00538 515 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 4 6 504 IPR039820 GO:0009638
Cca07g00538 515 MobiDBLite consensus disorder prediction 112 151 - -
Cca07g00538 515 MobiDBLite consensus disorder prediction 272 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00538 Cca-Chr7 7676922 7678469 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00538 - - gmx:100804863 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00538 07 7676922 7678469 Cca08g01154 08 32730516 32731991 PCT