Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00088 ATGGGAGCGGTTGCTGGAGAAGAGTTAGTTAAATGGGAGAAGATGGGTGGAGTTGGCGGTCATGAAGAGAAGATTCTGGTGTTAGTGAGGCTTAGGCCTTTGAGTGAGAAGGAAATTGCCGTGAATGAAGTAGCAGATTGGGAATGCATCAATGACACTACCATCTTGTACCGGAACACTCTCCGGGAAGGTTCCACATTCCCAAGTGCCTACACCTTTGATAGAGTATTTCGGGGTGACTGTTCGACAAAGCAGGTATATGAGGAAGGGGCCAAAGAAATTGCTCTGTCAGTTGTTGGCGGAATCAACTCAAGTATTTTTGCATATGGGCAAACGAGCAGTGGAAAGACATACACGATGGTTGGAATAACTGAATATGCTGTAGCAGATATTTTTGACTATATCAATAAGCATGAAGAAAGAGCATTTGTATTGAAGTTCTCAGCAATTGAAATTTATAACGAAATTATTAGGGACCTCCTGAGAACTGAGAACACATCCCTAAGGCTACGTGATGATCCTGAGAGAGGACCTCTAGTAGAGAAACTCACAGAGGAGACTCTACGGGACAGGGTGCATTTGAAAGAGCTCCTATCATTCTGTGAAGCACAGAGACAGGTGGGAGAGACATACCTCAATGACAAGAGTTCTCGATCTCACCAAATTATCAGACTGACAATTGAAAGTTCTGCCAGAGAATTCATGGATAAAAGCAACTCAACCACCCTTGCAGCTAGTGTGAATTTTGTTGATTTGGCAGGGAGTGAGCGTGCATCACAAGCATTATCTGCTGGGTCCAGATTGAAAGAAGGTTGTCATATAAACCGAAGTTTACTCACTCTTGGGACGGTCATTCGTAAACTTAGTAAGGGAAGACAAGGACACATCAATTACAGAGATTCTAAGTTGACACGCATACTGCAGCCTTTCTTAGGTGGCAATTCTAGAACAGCCATCATTTGCACCCTGAGCCCTACACGGAGCCATGTTGAGCAAACTAGAAACACCCTTCTCTTTGCTTGTTGCGCAAAACAAGTGACCACTAAAGCACAGGTTAATGTAGTGATGTCTGATAAGGCATTGGTCAAGCAACTGCAAAAAGAGGTAACCAGATTAGAGAGCGAGTTGAGAAATCCTGGTCTTCCTGCCACCAATTGTGATTATGCAGCAGTGTTGCGAAAGAAAAATCTCCAGATAGAAAAGATGGAGAGGGAGATTCGGGAGCTAGTGAAACAACGTGATCTTGCTCAATCTAGGGTTGAGGATTTGCTGCGTATGGTGGGAAATGATCAGAAATCTAGAAAAGAAATGACGGACACCTGGGAAGATGATGATTCAATATCAGAGTCATCAAGCATCTATCGTTCTGATTTACGCATTACAGAATTCAACAATCCTAACTATAACAATGAAGACAGTGAAAGTAGTCCTGATAGTAAGTTGTTTCCTCCCTTTGCCAATAAAAACCCTGATGAATACTGCAAAGAAGTTCAAAGTCTTGAATTGGAGGAATCAAGTAGAGATGACTTGGAATATCCTGATCCACCAGTAAGTGAAAATGGGGTGTTGGCATTACCATGGTATGGAGAGGAAAATGTAACAATTCAGGAAATACCGACCCCTGTGAATGAAGATAGGGAAGAGAGACAGATCCAAGACAATGCAACAAGTAGTGTGCTGGAGCAGAGACTGGATGATGCACAATTGAGTAATGATTCTCCACTGGCTAGCTCAGCAACAGTGTTAAATTGTAGGAATCTTAAATTAACAAGGAGCTGGAGTTGCAGGGAATATTACACTCCTGATAAAACAGAAGAAATGGAGCGGACTCCGCTGAATAGTTTTGAAAAATTCTTCCCTGGGAGACCAGATGGATTGCAGAGAAAATTCCTTCCATTAACTTATGATGCTTCCACAAAATTGTCAACTAATGGTTCACCGTCTTCTATTGGAAGTCCCTCTATGGATGAGTTAAGAACCAACAACTCCAGAACATATGCTAACGAGGATATTACTAGTGTCCAAACTTTTGTAGCTGGGATGAAGGAAATGGTCAAACTTGAGTATGAGAAGCAGCTTGTTGATGATCAGGATCATCAGGCAGAGACAACATATTTTAGATTTGAGAAGAATATGAAAGATGCTGGTGTAGATTCAATGTTAGAGGTACCTGGATCTCCAGTAGAATGGTCTATGCAATTCAAGCTTCAGCAAAGAGAGATAGTGGAGCTGTGGCAAACCTGCAATGTATCCCTGTTCCACAGGACCTACTTCTTCCTTTTGTTCAGGGGTGATCCAACAGACTCCATTTACATGGAGGTGGAGCACAGAAGATTATCTTTCCTCAAAGAAACATTTGCCGGAGGAAATCAGTCGTTGAACGACGATCAGACAGTAACATTAGCTTCAAGTGCGAAAGGTGTTCGGCACGAGAGAGACATGCTGGTGAAGCTCATGCAGAGAAGGCTATCCGAGGAAGAGAGGAAGAATCTCTTCAGAAAATGGAGCATTGCGTTGGATTCAAAGCGCAGGAGGAAGCAGCTGGCGAATCGCTTATGGAGCAACGCTGATATGAACCATGTTGCGGAGAGTGCTGCGGTTGTTGCAAAGTTAGTGAGGTTTACTGGGCAGGGTAAGGCCCTCAAGGAGATGTTTGGCCTTAGCTTCACACCACAACGCATGTCATATTCCTGGAGAAGTACCAGGGTCTCTCTATTTTAG 2721 0.4322 MGAVAGEELVKWEKMGGVGGHEEKILVLVRLRPLSEKEIAVNEVADWECINDTTILYRNTLREGSTFPSAYTFDRVFRGDCSTKQVYEEGAKEIALSVVGGINSSIFAYGQTSSGKTYTMVGITEYAVADIFDYINKHEERAFVLKFSAIEIYNEIIRDLLRTENTSLRLRDDPERGPLVEKLTEETLRDRVHLKELLSFCEAQRQVGETYLNDKSSRSHQIIRLTIESSAREFMDKSNSTTLAASVNFVDLAGSERASQALSAGSRLKEGCHINRSLLTLGTVIRKLSKGRQGHINYRDSKLTRILQPFLGGNSRTAIICTLSPTRSHVEQTRNTLLFACCAKQVTTKAQVNVVMSDKALVKQLQKEVTRLESELRNPGLPATNCDYAAVLRKKNLQIEKMEREIRELVKQRDLAQSRVEDLLRMVGNDQKSRKEMTDTWEDDDSISESSSIYRSDLRITEFNNPNYNNEDSESSPDSKLFPPFANKNPDEYCKEVQSLELEESSRDDLEYPDPPVSENGVLALPWYGEENVTIQEIPTPVNEDREERQIQDNATSSVLEQRLDDAQLSNDSPLASSATVLNCRNLKLTRSWSCREYYTPDKTEEMERTPLNSFEKFFPGRPDGLQRKFLPLTYDASTKLSTNGSPSSIGSPSMDELRTNNSRTYANEDITSVQTFVAGMKEMVKLEYEKQLVDDQDHQAETTYFRFEKNMKDAGVDSMLEVPGSPVEWSMQFKLQQREIVELWQTCNVSLFHRTYFFLLFRGDPTDSIYMEVEHRRLSFLKETFAGGNQSLNDDQTVTLASSAKGVRHERDMLVKLMQRRLSEEERKNLFRKWSIALDSKRRRKQLANRLWSNADMNHVAESAAVVAKLVRFTGQGKALKEMFGLSFTPQRMSYSWRSTRVSLF 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00088 906 PANTHER KINESIN-LIKE PROTEIN KIN-7F 9 905 - -
Cca07g00088 906 Coils Coil 355 375 - -
Cca07g00088 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 378 IPR027417 -
Cca07g00088 906 CDD KISc_CENP_E 24 346 - -
Cca07g00088 906 Coils Coil 392 426 - -
Cca07g00088 906 ProSiteProfiles Kinesin motor domain profile. 24 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca07g00088 906 MobiDBLite consensus disorder prediction 464 482 - -
Cca07g00088 906 Gene3D Kinesin motor domain 19 377 IPR036961 -
Cca07g00088 906 ProSitePatterns Kinesin motor domain signature. 245 256 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cca07g00088 906 Pfam Domain of unknown function (DUF3490) 733 892 IPR021881 -
Cca07g00088 906 Pfam Kinesin motor domain 30 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca07g00088 906 MobiDBLite consensus disorder prediction 641 664 - -
Cca07g00088 906 PANTHER CENTROMERE PROTEIN E 9 905 - -
Cca07g00088 906 SMART kinesin_4 22 354 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca07g00088 906 MobiDBLite consensus disorder prediction 464 488 - -
Cca07g00088 906 PRINTS Kinesin heavy chain signature 101 122 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca07g00088 906 PRINTS Kinesin heavy chain signature 210 227 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca07g00088 906 PRINTS Kinesin heavy chain signature 246 264 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca07g00088 906 PRINTS Kinesin heavy chain signature 296 317 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00088 Cca-Chr7 1184533 1190453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00088 22 376 Miscellaneous Gene Families AT5G06670 41.828 6.66e-78 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00088 K11498 - gmx:100813479 1435.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00088 07 1184533 1190453 Cca07g00088 07 1184533 1190453 ECH
Cca07g00088 07 1184533 1190453 Cca06g01284 06 27516085 27524309 ECH