Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g02041 ATGATTTTGTTTTGGAGATGGTTGTTTGTAATTGTGATTGTGGGGTTAGTGTTGCCAGTGTCAGTAACGGGTCGATTCGTGGTGGAGAAGAACAGCCTGAGAGTGACGTCACCGGAGAAAATAAGAGGCACACACGATAGTGCCATTGGCAACTTCGGAATACCTCAATACGGTGGTAGCATGGCCGGGATTGTCGTCTACCCCAAGGATAACAAGAAAGGTTGTAAAGAGTTTGATGACTCTGGAATTTCCTTCAAATCACGCCCCGGTGCTCTTCCCACCATCCTTCTGCTCGATCGCGGAAGTTGCTTCTTTGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGAGCTTCTGCGGTTCTTGTTGCAGATGATATTGAGGAGCCCTTAATAACTATGGACACGCCTGAAGAGGACGGTTCATCTGCCAAATATGTCGAGAACATAACTATACCGTCTGCTCTTGTTGGAAAAAGTTTTGGTGCTAAGTTAAAGGATGCCTTAAGTGATGGGGACATGGTTAACGTAAACCTTGACTGGAGAGAGGCTGTCCCACACCCAGATGATCGTGTGGAGTATGAGTTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAATGTGACATGTTGATGGAATTTGTCAAGGATTTCAAGGGTGCAGCTCAGATACTTGAGAAAGGTGGTTACACTCAGTTTACACCCCATTATATCACTTGGTATTGTCCTCATGCATTCACCTTGAGCAAACAGTGCAAGTCTCAATGCATAAATCATGGAAGATATTGCGCTCCGGATCCCGAGCAGGACTTCAGCACAGGTTATGATGGGAAAGATGTGGTTATTGAAAATTTAAGGCAGCTATGTGTTTTCAAGGTGGCAAATGAAACTCAAAAGCCTTGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCCATGAAGGAGAAGAAGTACAATAAGGAATGTGCGAATGCTGTGATTAGGTCACTGGGTCTTAATATTGAAAAGATTGATAAGTGCATGGGTGATCCAGATGCCGACACTGAAAATCCTGTTTTGAAAGAAGAGCAAGATGCTCAAATTGGAAAGGGATCGCGAGGTGATGTTACAATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAGGAAAATTGGAGAAAGGCGCCGTTCTAAAGGCTATATGTTCTGGGTTTGAGGAAACTACTGAACCAGCCGTTTGCTTGAGCAATGATGTGGAGACAAATGAGTGCTTGACGAACAATGGTGGTTGTTGGCAGGATAAAGCAGCTAACATCACTGCATGCAAGGATACATTCCGTGGGCGAGTATGTGAATGCCCTCTGGTTGATGGTGTACAATTCAAAGGAGATGGTTATACAACTTGTGAAGCCAGTGGACTTGGGCGTTGCAAGATAAACAATGGAGGCTGTTGGCATGATGCCCGGAATGGACATGCATTTTCTGCTTGTTTGGATATTGGAGGGGTCAAATGCCAGTGCCCCACAGGGTTTAAAGGTGATGGTGTCAAAAATTGTGAAGATATTGATGAATGTAAAGAGAAAAAGGCATGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGTAGCTATGACTGCAGTTGTAATGGAGATCTTCTGTATATGAAGGACCATGATACCTGCATAAGTAAAACTGGCAGCCAGGGAAGATCTTCTTGGGCTGCTTTTTGGTTGATTTTACTTGGCGTAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTATAGAATAAGGCAATACATGGATTCCGAAATCAGAGCAATCATGGCACAATATATGCCCTTGGACAGCCAAGCAGAAGTTCCAAATCATGTCAATGATCAAAGAGCATGA 1887 0.442 MILFWRWLFVIVIVGLVLPVSVTGRFVVEKNSLRVTSPEKIRGTHDSAIGNFGIPQYGGSMAGIVVYPKDNKKGCKEFDDSGISFKSRPGALPTILLLDRGSCFFALKVWNAQKAGASAVLVADDIEEPLITMDTPEEDGSSAKYVENITIPSALVGKSFGAKLKDALSDGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPHAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANETQKPWVWWDYVTDFQIRCPMKEKKYNKECANAVIRSLGLNIEKIDKCMGDPDADTENPVLKEEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTEPAVCLSNDVETNECLTNNGGCWQDKAANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGLGRCKINNGGCWHDARNGHAFSACLDIGGVKCQCPTGFKGDGVKNCEDIDECKEKKACQCPECSCKNTWGSYDCSCNGDLLYMKDHDTCISKTGSQGRSSWAAFWLILLGVVMIAGGAFLVYKYRIRQYMDSEIRAIMAQYMPLDSQAEVPNHVNDQRA 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g02041 628 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 13 607 - -
Cca06g02041 628 Pfam PA domain 63 164 IPR003137 -
Cca06g02041 628 Gene3D Laminin 471 521 - -
Cca06g02041 628 Pfam Complement Clr-like EGF-like 500 520 IPR026823 -
Cca06g02041 628 CDD EGF_CA 517 545 - -
Cca06g02041 628 Gene3D Laminin 522 559 - -
Cca06g02041 628 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 13 607 - -
Cca06g02041 628 Gene3D - 23 187 - -
Cca06g02041 628 ProSitePatterns EGF-like domain signature 2. 501 515 IPR000742 -
Cca06g02041 628 SUPERFAMILY PA domain 94 174 IPR046450 -
Cca06g02041 628 SMART egfca_6 517 559 IPR001881 GO:0005509
Cca06g02041 628 CDD PA_VSR 51 178 - -
Cca06g02041 628 ProSitePatterns Calcium-binding EGF-like domain signature. 517 543 IPR018097 GO:0005509
Cca06g02041 628 Gene3D Laminin 410 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g02041 Cca-Chr6 35651593 35655986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g02041 24 628 Miscellaneous Gene Families AT2G14740 84.959 0.0 1104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g02041 - - gmx:100820115 1259.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g02041 06 35651593 35655986 Cca06g02041 06 35651593 35655986 ECH
Cca06g02041 06 35651593 35655986 Cca02g02497 02 46146516 46152332 PCT