Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02497 ATGAAGCTTCGGAGATCCTCAATCTGTGTCCTTCTAGGGTTTATGCTGCTGCTCCTTTCGCCGCCGTCAATGGCGAAATTCGTGGTGGAGAAGAACAGCTTGACGGTGACGTCGCCGGACAACATCAAGGGCACGCACGATAGCGCGATTGGCAACTTCGGGATACCCCAATACGGAGGCAGCATGGCTGGGAACGTGGTGTACCCTAAAGACAACAAAAAGGGTTGCAAGGAGTTCGATGAGTATGGGATTTTCTTCAAATCCAAACCCGGTTCTCTTCCCACTTTCGTTTTGCTCGATCGAGGAAATTGCTTCTTTGCTTTGAAGGTTTGGAATGCACAGAAGGCTGGGGCTTCCGCTGTTCTTGTTGCGGATGATATTGAGGAGAAGTTGATAACCATGGACACTCCTGAAGAGGATGGATCGTCTGCAAAATACATAGAGAACATAACAATACCATCTGCTCTCATTGAAAAAAGTTTTGGTGAAAAGTTAAAGAGTGCCATAAGTAATGGGGATATGGTCAACATAAATCTTGATTGGAGAGAGGCTGTCCCCCACCCAGACGATCGTGTGGAGTATGAATTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAGTGTGATATGTTGATGGAATTTGTGAAAGATTTTAAGGGTGCGGCACAGATATTGGAGAAAGGTGGTTATACTCAATTTACACCCCATTATATAACTTGGTACTGTCCTCAGGCTTTCACGTTAAGCAAACAGTGCAAGTCCCAGTGCATAAATCATGGGAGATATTGTGCACCGGATCCTGAACAAGATTTCAGCACTGGTTATGATGGGAAAGATGTAGTTATTGAAAATTTAAGACAGCTATGTGTTTACAAGGTGGCAAATGAAACCAAAAAGCCTTGGGTCTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCAATGAAGGAGAAAAAGTACAACAAGAAATGTGCAGATGCTGTCATTGAATCACTTGGACTTGATATTAAAAAGATTGAAAGGTGCATGGGAGATCCAAATGCTGATTCTGAAAATCCTGTTTTGAAAGAAGAGCAAGATGCCCAAGTTGGGAAGGGGACACGCGGTGATGTTACCATTTTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATTTGTGCTGGTTTTGAAGAAACCACCGAACCAGCTGTTTGTTTGAGCAGTGATGTGGAGACAAATGAGTGCTTAGAAAACAATGGTGGTTGTTGGCAGGATAAAACAGCTAACATCACCGCATGCAAGGATACGTTCCGTGGGAGAGTATGTGAATGCCCCTTGGTGGATGGCGTGCAGTTCAAAGGAGATGGTTATACAACCTGTGCAGCTAGTGGACCTGGAAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGAGGCTCGGAATGGACATGCATATTCTGCTTGTTTGGATGATGGAAGCGTTAAATGCCAGTGTCCTGCAGGCTTTAAAGGTGACGGTGTCAAGAATTGTGAAGACATTAATGAATGCAAAGAGAAGAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGCAGCTATGACTGCACTTGTAGTGGGGATCTTCTGTATATAAGGGACCATGATACCTGCATAAGTAAAACTGCCACTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTATTTTAATTGGCTTGGTTTTGGCTGGTGCTGGGGCATACCTTGTGTACAAATATAGAATAAGGTCATATATGGATTCTGAAATCAGAGCCATCATGGCACAGTATATGCCATTGGACAGCCAAGCAGGAGTTGTAAATCATGCGGACGAAGAAAGAGCGTGA 1893 0.4416 MKLRRSSICVLLGFMLLLLSPPSMAKFVVEKNSLTVTSPDNIKGTHDSAIGNFGIPQYGGSMAGNVVYPKDNKKGCKEFDEYGIFFKSKPGSLPTFVLLDRGNCFFALKVWNAQKAGASAVLVADDIEEKLITMDTPEEDGSSAKYIENITIPSALIEKSFGEKLKSAISNGDMVNINLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVYKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKKCADAVIESLGLDIKKIERCMGDPNADSENPVLKEEQDAQVGKGTRGDVTILPTLVVNNRQYRGKLEKGAVMKAICAGFEETTEPAVCLSSDVETNECLENNGGCWQDKTANITACKDTFRGRVCECPLVDGVQFKGDGYTTCAASGPGRCKINNGGCWHEARNGHAYSACLDDGSVKCQCPAGFKGDGVKNCEDINECKEKKACQCPECSCKNTWGSYDCTCSGDLLYIRDHDTCISKTATQEGRSAWAAFWVILIGLVLAGAGAYLVYKYRIRSYMDSEIRAIMAQYMPLDSQAGVVNHADEERA 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02497 630 Pfam Complement Clr-like EGF-like 499 521 IPR026823 -
Cca02g02497 630 Pfam PA domain 63 165 IPR003137 -
Cca02g02497 630 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 16 609 - -
Cca02g02497 630 Gene3D Laminin 472 552 - -
Cca02g02497 630 ProSitePatterns EGF-like domain signature 2. 502 516 IPR000742 -
Cca02g02497 630 SUPERFAMILY PA domain 32 172 IPR046450 -
Cca02g02497 630 CDD PA_VSR 52 179 - -
Cca02g02497 630 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 16 609 - -
Cca02g02497 630 Gene3D - 24 188 - -
Cca02g02497 630 Gene3D Laminin 411 467 - -
Cca02g02497 630 ProSitePatterns Calcium-binding EGF-like domain signature. 518 544 IPR018097 GO:0005509
Cca02g02497 630 CDD EGF_CA 518 546 - -
Cca02g02497 630 SMART egfca_6 518 560 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02497 Cca-Chr2 46146516 46152332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02497 25 630 Miscellaneous Gene Families AT2G14740 84.158 0.0 1096
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02497 - - gmx:100803958 1273.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02497 02 46146516 46152332 Cca02g02497 02 46146516 46152332 ECH
Cca06g02041 06 35651593 35655986 Cca02g02497 02 46146516 46152332 PCT