Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01934 ATGTCATCTAAAGTGTTTAGGGCAACCCGATCATCTATATCAGCAACATCTTCTGATGCACCTGATGGCCAGAAGCCTCCTTTACCTCCAACCGTAACATTTGGCCGGAGAACTTCCTCCGGTCGCTATGTCAGTTACTCTAGAGATGATCTTGACAGTGAGCTTGGGAGTACTGACTTCATGAATTATACAGTGCATATACCTCCAACCCCTGATAACCAACCTATGGATCCATCTATCTCGCAGAAAGTTGAGGAGCAATATGTGTCGAATTCTCTTTTCACAGGTGGATTCAACAGTGTTACTCGAGCCCATCTAATGGATAAGGTGATAGAATCTGAAGCAAATCATCCGCAGATGGCTGGTGCAAAAGGATCTTCATGTGCAGTTCCTGGTTGTGATTCTAAGGTGATGAGCGATGAACGTGGTGTTGATATTCTTCCATGTGAGTGTGATTTCAAGATATGTAGAGATTGTTATGTAGATGCAGTAAAGACCGGAGGCGGGGTATGCCCGGGATGCAAGGAGCAATATAAGAACACAGAACTAGATGAAGGGGCTGTAGATAATGGACGTCCCCTTCCGCTTCCTCCACCAAGTGGAATGTCTAAAATGGAGAGGAGATTGTCCTTGATGAAGTCAACAAAGTCAGCATTAATGAGGAGCCAAACTGGTGATTTTGATCATAATAGGTGGCTCTTTGAAACTAAGGGGACCTATGGCTATGGTAATGCTATATGGCCAAAAGAAGGTGGTTTTGGAAATGAAAAAGAGGATGATGTCGTTGAGCCAACTGAATTGATGAACAGACCATGGAGACCACTTACGCGGAAACTGAAGATACCTGCTGCTGTCTTGAGTCCATATCGTCTTATTATTTTTATTCGATTGGTTGTCTTGGCATTGTTCCTGGCATGGAGGATCAAACACCAAAATACCGATGCAGTCTGGCTATGGGGAATGTCTGTTGTTTGTGAGATATGGTTTGCTTTTTCCTGGGTGCTGGATCAACTTCCCAAACTATGCCCAGTGAATCGTTCCACAGATCTCAATGTTCTGAAGGAGAAATTTGAAACGCCAACCCCTAACAATCCTACTGGAAAATCTGATCTTCCTGGCATTGATGTCTTTGTTTCTACTGCTGATCCTGAGAAAGAACCTCCTCTTGTCACTGCAAACACTATCTTGTCTATTTTAGCTGCTGATTACCCTGTCGAGAAGCTTTCTTGCTATGTTTCTGATGATGGAGGTGCACTTCTAACTTTTGAGGCAATGGCTGAAGCTGCCAGCTTTGCTAATATGTGGGTTCCCTTCTGCCGGAAACATGATATAGAGCCCAGGAATCCTGAATCATACTTCAACTTAAAAAGAGACCCTTACAAGAACAAAGTGCGGTCAGATTTTGTCAAGGATCGTAGAAGGGTGAAACGTGAGTATGATGAATTCAAGGTTAGGATCAATAGTCTGCCTGATTCTATCCGTCGCCGGTCAGATGCCTATCATGCAAGAGAGGAAATCAAGGCCATGAAAGTTCAGAGACAAAACAGGGAAGATGAACCTGTTGAAACTGTAAAGATTCCAAAAGCAACATGGATGGCTGATGGAACTCATTGGCCAGGAACTTGGCTGAGTCCTGCATCTGAGCATTCTAAGGGTGACCATGCTGGTATAATTCAGGTGATGTTGAAACCTCCTAGTGATGAACCTCTTCTAGGAAATGCTGATGATGCAAAGCTCCTGGATCTGACTGATGTTGATATCCGTCTTCCCCTTCTTGTTTATGTTTCTCGAGAGAAGCGTCCAGGCTATGATCATAACAAAAAAGCCGGGGCCATGAATGCCTTGGTTCGGGCCTCAGCTATAATGTCTAATGGCCCTTTTATACTCAATCTTGACTGTGACCACTATATCTACAACTCAAAGGCAATGAGGGAGGGTATGTGCTTTATGATGGATCGTGGAGGTGACCGCCTTTGCTATGTCCAGTTCCCACAAAGGTTTGAAGGGATTGATCCTTCTGATAGATATGCCAACCATAATACTGTCTTCTTTGATGTCAATATGCGAGCCCTTGATGGACTTCAAGGGCCAGTCTACGTGGGAACTGGGTGCCTTTTCCGACGAATAGCACTTTATGGTTTTGACCCGCCCCGTTCTAAAGAGCACCACACAGGTTGCTGTAATTGTTGCTTTGGTCGTCAGAAGAAGCATGCATCAATCGCAAGCACCCCAGAAGAGAACCGTGCACTAAGGATGGGCGATTCTGATGAAGAGGAAATGAATCTATCACTTTTCCCTAAGAAGTTTGGCAACTCAACTTTCCTCATTGACTCAATTCCAGTAGCTGAGTTCCAAGGCCGACCACTAGCTGATCACCCTGCCGTGAAAAACGGTCGGCCACCTGGTGCTCTCCTCATACCCCGCGATCTTCTCGATGCGTCAACCGTCGCAGAGGCCATCAGTGTCATCTCCTGTTGGTACGAAGATAAGACTGAGTGGGGACATCGCGTTGGGTGGATCTATGGATCTGTGACAGAGGATGTGGTCACTGGCTATAGGATGCACAATAGGGGATGGAAATCAGTTTACTGCGTGACCAAGCGTGACGCCTTCAGAGGAACTGCTCCCATCAATCTCACTGACAGGCTGCATCAGGTCCTCAGATGGGCTACCGGCTCGGTCGAAATCTTCTTCTCACGAAACAACGCACTCCTGGCTAGCCCAAGAATGAAAATTCTTCAAAGAATTGCATACCTTAATGTTGGAATCTACCCTTTCACATCCATATTCCTTATTGTCTACTGCTTCCTTCCTGCACTGTCCCTCTTCTCTGGCCAGTTCATTGTTCAAACCCTCAATGTCACTTTTCTCTCATACCTCTTGGGAATCACTGTCACATTGTGCATGCTTGCAGTGCTTGAAATCAAGTGGTCTGGCATTGAGCTTGAAGAGTGGTGGAGAAATGAACAGTTTTGGCTGATTGGAGGGACCAGTGCTCATCTAGCTGCTGTGCTTCAGGGTTTGCTCAAAGTCATAGCAGGAATTGAAATCTCATTCACCTTGACTTCAAAATCAGGTGGTGACGATGTAGATGATGAGTTTGCTGATCTCTACATTGTGAAATGGACATCACTTATGATACCACCTATTACAATTATGATGGTTAACTTGATAGCAATAGCAGTTGGAGTTAGCAGAACCATATACAGTGTGATACCACAGTGGAGCCGTTTATTAGGTGGTGTTTTCTTCAGTTTCTGGGTCTTGGCACATCTCTATCCCTTTGCAAAAGGTTTGATGGGAAGAAGAGGGAGGACTCCAACTATAGTTTTTGTGTGGTCAGGACTCATAGCGATCACAATTTCTCTCCTCTGGGTGGCTATTAACCCCCCTGCTGGTTCTAACCAAATTGGAGGTTCATTCCAGTTCCCATGA 3435 0.4518 MSSKVFRATRSSISATSSDAPDGQKPPLPPTVTFGRRTSSGRYVSYSRDDLDSELGSTDFMNYTVHIPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVIESEANHPQMAGAKGSSCAVPGCDSKVMSDERGVDILPCECDFKICRDCYVDAVKTGGGVCPGCKEQYKNTELDEGAVDNGRPLPLPPPSGMSKMERRLSLMKSTKSALMRSQTGDFDHNRWLFETKGTYGYGNAIWPKEGGFGNEKEDDVVEPTELMNRPWRPLTRKLKIPAAVLSPYRLIIFIRLVVLALFLAWRIKHQNTDAVWLWGMSVVCEIWFAFSWVLDQLPKLCPVNRSTDLNVLKEKFETPTPNNPTGKSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYFNLKRDPYKNKVRSDFVKDRRRVKREYDEFKVRINSLPDSIRRRSDAYHAREEIKAMKVQRQNREDEPVETVKIPKATWMADGTHWPGTWLSPASEHSKGDHAGIIQVMLKPPSDEPLLGNADDAKLLDLTDVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRSKEHHTGCCNCCFGRQKKHASIASTPEENRALRMGDSDEEEMNLSLFPKKFGNSTFLIDSIPVAEFQGRPLADHPAVKNGRPPGALLIPRDLLDASTVAEAISVISCWYEDKTEWGHRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLGITVTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSVIPQWSRLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGSNQIGGSFQFP 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01934 1144 MobiDBLite consensus disorder prediction 1 40 - -
Cca06g01934 1144 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 35 1142 - -
Cca06g01934 1144 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 35 1142 - -
Cca06g01934 1144 Pfam Cellulose synthase 374 1134 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cca06g01934 1144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 192 IPR013083 -
Cca06g01934 1144 MobiDBLite consensus disorder prediction 1 21 - -
Cca06g01934 1144 Pfam RING/Ubox like zinc-binding domain 130 179 - -
Cca06g01934 1144 MobiDBLite consensus disorder prediction 185 204 - -
Cca06g01934 1144 SUPERFAMILY RING/U-box 113 182 - -
Cca06g01934 1144 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 582 715 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01934 Cca-Chr6 34613665 34618916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01934 2 1144 Glycosyltransferase AT3G03050 85.043 0.0 2042
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01934 K20924 - gmx:100792604 2289.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00186 04 1695943 1709592 Cca06g01934 06 34613665 34618916 ECH
Cca06g01934 06 34613665 34618916 Cca06g01934 06 34613665 34618916 ECH