Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00186 ATGGCAGGAAAGTACATGCCGCGATCCAATTCGCGAATGACAGTGTTCctcttcctcctcggtttctctctcctcttaatcctcttctctctctctcctctccgcacgcctcctccttctTCCGCCACGCACTTCCACGTTCCCGACGCCGAAACCTCCTTCCTCGCCTCCCTCGACCACTTCCTCGCCAACACTCCCACGCCACTCTCCCTCTCCGACGAACAACATCAAGACACCACCAAGCTCGACGACGCCGTTTATCGCTCCGACATGGACAGGCTCTACTCCGATCCTTACTACCCGCTCCCCCTTCCCCTTAGGGTTTACGTCTACGACATGCCCCGCAAATTCACCTACGATTTGCTCTGGCTCTTCAAAAAAACTTACTCAGATACCTCAAATCTCACCTCCAATGGAAGCCCCGTTCACCGTCTCATCGAACAGCACTCCATTGATTACTGGCTCTGGGCGGATCTCATCGCTCCCCAATCGGAGAGGCTCTTGACCTCCGTCGTTAGGGTTCACCGGCAGGAGGACGCTGACTTGTTCTACATACCATTCTTCACCACCATCAGCTTCTTCCTCATGGAAAAACAGCAATGCAAGGCCCTTTATAGGGAAGCTTTGAAGTGGATCACTGATCAACCTGCATGGAAGCGTTCTGGTGGTAGAGATCACATACTCCCAGTGCATCATCCCTGGTCTTTTAAGTCTGTTCGCAGATACGTCAAGAATGCAATTTGGCTGTTGCCTGATATGGATTCCACTGGCAACTGGTTATTCTCGAACTTCCGCCGATTCTTTGTAAATGCATTGATATTGTTTGTTGGGAATGGCTTTGAGTGGTCTTTTGCCTCTTTCAGGTACAAGCCTGGACAGGTTTTTCTGGAGAAAGACGTCATTCTTCCTTATGTTCCCAATGTTGATTTATGTGATGCCAAATGTTTATCTGAGACGAATCAGAAGAGAAGCACGCTGCTTTTCTTTCGGGGCCGGCTTAAAAGAAATGCGGGAGGGAAGATTCGCTCTAAACTTGGAGCTGAATTAATTGGTGCCGATGGTGTGATTATAGAGGAGGGAACAGCTGGAGAGGGGGGTAAAGAAGCTGCTCAAAGGGGCATGCGCAAGTCTCTATTTTGCTTAAGCCCAGCTGGTGACACTCCATCCTCTGCTAGATTATTTGATGCTATTGTTAGTGGATGCATCCCAGTTATAATTAGTGATGAGCTGGAGCTTCCTTTTGAAGGAATACTTGATTACAGAAAGATAGCATTGTTCATTTCTTCTAATGACGCTGTAAAGCCAGGTTGGCTTTTGAAATATTTAAGAGGCATTAGACCTGCTCATATCAAAGAAATTCAACAAAATCTTGCCAAGTACTCGAGGCATTTCTTGTATTCTAGTCCTGCTCAACCATTGGGTCCTGAAGACTTGGTTTGGAAAATGATGGCTGGCAAGGTGGTGAACATCAAGCTTCACACCAGAAGATCTCAACGGGATGTCAGATCTCAAACTCTAGTGGCATTTAGTTTTTCAAGAAACAGGTATCAGGTTAAGCAATGCAACGGAAGTCAAAGGGTTTTTCCAACTCAGCCTGACTTGATATTCAGGATTTTTAAGATTAGTCTTTGTCCTCAAAAAATGTCATCTAAACCATTCAAGCCAAGCCGGTTATCTCAGTCAGCATCTTCTGATGCATCTGAAGGGCCGAGACCTCCTTTGCCTCCAACTGTAACATTTGGGCGAAGAACTACCTCGGGTCGTTACATAAGCTACTCCAGAGATGATCTTGACAGTGAAATAGGGAGCAATGACTTCATGAATTATACAGTGCATTTGCCACCAACTCCTGATAACCAACCTATGGATCCATCAATATCACAGAAAGTTGAGGAGCAGTATGTGTCAAGTTCACTTTTCACAGGAGGGTTCAACAGTGCTACTCGCGCGCATCTGATGGATAAGGTGATAGAGTCTGAAGCAAACCATCCACAGATGGCTGGTGCAAAAGGGTCTTCATGTGCAATTCCTGGTTGTGATAGTAAGGTGATGAGTGACGAACGTGGTGAGGATATTCTTCCTTGTGAGTGTGATTTTAAGATATGTAGAGACTGCTATATAGATGCTGTGAAAACAGGAGATGGAATGTGCCCTGGATGTAAAGAGTCCTATAAAAACACAGAGCTGGATGAAGTTGCTGTGGATGATGGAAATGGAAGGCCACTTCCACTTCCTCCCTCAAGTGGAGTGTCTAAAATGGAGAGGAGATTGTCCTTGATGAAGTCAACAAAGTCAGCACTAATGAGAAGCCAGACTGGAGACTTTGATCACAATAGGTGGCTCTTTGAAACAAAGGGTACCTATGGCTATGGCAACGCCATTTGGCCAAAGGGAGGGAATTTTGGAAATGGAAACGAGGATGATGATGTTGTTGAGCCAACTGAGTTGATGAACAGACCCTGGAGACCACTTACAAGGAAACTGAAGATACCTGCTGCTGTTCTCAGCCCATATCGACTCATCATTTTTGTTCGCATGGTTGTCCTGGTACTGTTTCTGACCTGGAGGGTCAAGCACAAAAATACAGATGCAATCTGGCTATGGGGCATGTCTGTGGTTTGTGAGATATGGTTTGCTTTTTCTTGGCTTCTAGATCAACTGCCAAAGCTATGCCCAATAAACCGTTCCACAGATCTTAATGTTTTGAAGGAAAAATTTGAAATGCCAAGTCCTAACAATCCTACTGGAAAGTCTGATCTACCAGGCATAGATGTCTTTGTCTCCACTGCTGATCCTGAGAAAGAACCACCTCTTGTCACTGCAAACACCATCTTATCTATTTTAGCTGCAGACTATCCAGTTGAGAAACTTTCTTGCTATGTTTCTGATGATGGAGGTGCACTTCTAACATTTGAGGCAATGGCTGAAGCTGCCAGTTTTGCTAATGTGTGGGTTCCATTCTGCCGTAAGCATAATATAGAGCCTAGAAATCCTGAATCATATTTCAACCTAAAGAGAGATCCCTACAAAAACAAAGTGAAACCAGATTTTGTCAAGGACCGCAGGCGGGTGAAGCGTGAGTATGATGAATTCAAGGTTAGGATCAATGGTCTTCCTGACTCCATTCGTCGTCGATCTGATGCATTTCATGCAAGAGAGGAAATCAAGGCCATGAAACTTCAGAGACAAAACAAGGAATATGAACCTTTAGAACATGTAAAAATTCCAAAAGCAACATGGATGGCTGATGGAACTTATTGGCCAGGAACTTGGTTGAACCCTTCACCTGATCACTCTAGGGGTGATCATGCTGGTATAATTCAGGTGATGTTGAAACCTCCTAGTGATGAACCTCTTCTTGGAAATGCTGATGATACAAAGCTCATTGACCTCACTGATGTTGATATCCGTCTTCCTCTTCTTGTGTATGTCTCTAGAGAGAAACGTCCAGGCTATGATCACAACAAAAAGGCCGGTGCCATGAATGCCTTGGTTCGAGCCTCAGCTATCATGTCCAATGGTCCTTTCATACTCAACCTTGATTGTGACCACTACATCTACAATTCCAAGGCAATGATGGAAGGTATGTGCTTCATGATGGATCGTGGTGGTGACCGCATTTGCTATGTCCAGTTCCCACAAAGGTTTGAGGGGATTGACCCTTCAGACAGATATGCCAATCATAACACAGTCTTCTTTGATGTCAACATGAGAGCCCTTGATGGGCTTCAAGGGCCAGTCTATGTAGGAACTGGTTGTCTTTTTAGGAGGGTTGCCCTCTATGGTTTTGACCCTCCCCGCTCCAAAGAACACCACCCTGGTTGCTGTAGTTGCTGCTTTGGTAGCAGGAAGAAGAATGCTAATGCTAACATATCTGAAGAGAACCTGGCACTAAGGATGGGTGACTCTGGTGAAGAAGAAATGAACCTGGCAATGTTCCCTAAAAAGTTTGGAAACTCAAGTTTCCTCATTGACTCAATCCCTGTGGCAGAGTTCCAAGGAAGGCCACTTGCTGATCACCCTGCAGTGAAGAATGGACGCCCTCCCGGCGCTCTCACCATTCCTCGTGAGCTTCTCGATGCATCCACAGTGGCAGAGGCAATCAGTGTGATCTCTTGTTGGTATGAGGACAAGACTGAGTGGGGACAGCGTGTTGGATGGATCTATGGTTCAGTCACTGAGGATGTGGTTACTGGCTATAGAATGCACAATAGAGGGTGGAAATCAGTGTATTGTGTTACCAAACGTGATGCATTCCGTGGAACTGCTCCCATCAATCTCACTGATAGGCTGCATCAAGTGCTTAGATGGGCAACTGGCTCAGTTGAAATTTTCTTCTCAAGAAACAATGCACTTTTGGCTAGTCCAAGAATGAAGTTTCTTCAAAGAATTGCATACCTTAATGTTGGAATTTATCCATTCACTAGCATATTCCTTATTGTGTATTGTTTCCTTCCTGCACTTTCCCTCTTCTCAGGCCAATTCATAGTTCAAACCCTCAATGTCACATTTCTTGCTTATCTCTTGACCATCACTGTGACATTGTGCATGCTTGCTGTGCTTGAAATCAAGTGGTCTGGAATTGAGCTGGAAGAGTGGTGGAGAAATGAGCAGTTTTGGCTGATTGGAGGGACAAGTGCACACCTTGCTGCTGTGCTGCAGGGTTTGCTCAAAGTGATTGCAGGGATTGAAATCTCATTCACCTTGACATCAAAATCTGGTGGAGATGATGTGGATGATGAGTTTGCTGATCTCTATATTGTGAAGTGGACATCCCTTATGATACCACCAATCACAATCATGATGGTGAACTTGATAGCTATAGCAGTTGGAGTTAGCAGGACCATATACAGTGTGATACCTCAGTGGAGCCGGCTACTAGGTGGTGTTTTCTTCAGTTTTTGGGTATTGACTCATCTCTACCCTTTTGCAAAAGGTTTGATGGGAAGAAGAGGAAGGACACCTACCATTGTTTTTGTCTGGTCAGGCCTCATAGCAATCACAATATCACTCCTTTGGGTGGCAATCAACCCCCCTGCTGGTACCAACCAAATTGGTGGTTCATTCCAGTTCCCATGA 5079 0.4452 MAGKYMPRSNSRMTVFLFLLGFSLLLILFSLSPLRTPPPSSATHFHVPDAETSFLASLDHFLANTPTPLSLSDEQHQDTTKLDDAVYRSDMDRLYSDPYYPLPLPLRVYVYDMPRKFTYDLLWLFKKTYSDTSNLTSNGSPVHRLIEQHSIDYWLWADLIAPQSERLLTSVVRVHRQEDADLFYIPFFTTISFFLMEKQQCKALYREALKWITDQPAWKRSGGRDHILPVHHPWSFKSVRRYVKNAIWLLPDMDSTGNWLFSNFRRFFVNALILFVGNGFEWSFASFRYKPGQVFLEKDVILPYVPNVDLCDAKCLSETNQKRSTLLFFRGRLKRNAGGKIRSKLGAELIGADGVIIEEGTAGEGGKEAAQRGMRKSLFCLSPAGDTPSSARLFDAIVSGCIPVIISDELELPFEGILDYRKIALFISSNDAVKPGWLLKYLRGIRPAHIKEIQQNLAKYSRHFLYSSPAQPLGPEDLVWKMMAGKVVNIKLHTRRSQRDVRSQTLVAFSFSRNRYQVKQCNGSQRVFPTQPDLIFRIFKISLCPQKMSSKPFKPSRLSQSASSDASEGPRPPLPPTVTFGRRTTSGRYISYSRDDLDSEIGSNDFMNYTVHLPPTPDNQPMDPSISQKVEEQYVSSSLFTGGFNSATRAHLMDKVIESEANHPQMAGAKGSSCAIPGCDSKVMSDERGEDILPCECDFKICRDCYIDAVKTGDGMCPGCKESYKNTELDEVAVDDGNGRPLPLPPSSGVSKMERRLSLMKSTKSALMRSQTGDFDHNRWLFETKGTYGYGNAIWPKGGNFGNGNEDDDVVEPTELMNRPWRPLTRKLKIPAAVLSPYRLIIFVRMVVLVLFLTWRVKHKNTDAIWLWGMSVVCEIWFAFSWLLDQLPKLCPINRSTDLNVLKEKFEMPSPNNPTGKSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANVWVPFCRKHNIEPRNPESYFNLKRDPYKNKVKPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAFHAREEIKAMKLQRQNKEYEPLEHVKIPKATWMADGTYWPGTWLNPSPDHSRGDHAGIIQVMLKPPSDEPLLGNADDTKLIDLTDVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMMEGMCFMMDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRVALYGFDPPRSKEHHPGCCSCCFGSRKKNANANISEENLALRMGDSGEEEMNLAMFPKKFGNSSFLIDSIPVAEFQGRPLADHPAVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLAYLLTITVTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSVIPQWSRLLGGVFFSFWVLTHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSFQFP 1692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00186 1692 Pfam Exostosin family 105 442 IPR040911 -
Cca04g00186 1692 SUPERFAMILY Nucleotide-diphospho-sugar transferases 938 1289 IPR029044 -
Cca04g00186 1692 MobiDBLite consensus disorder prediction 552 567 - -
Cca04g00186 1692 Pfam RING/Ubox like zinc-binding domain 676 725 - -
Cca04g00186 1692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 657 740 IPR013083 -
Cca04g00186 1692 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 581 1690 - -
Cca04g00186 1692 SUPERFAMILY RING/U-box 659 728 - -
Cca04g00186 1692 MobiDBLite consensus disorder prediction 550 582 - -
Cca04g00186 1692 Pfam Cellulose synthase 923 1683 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cca04g00186 1692 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1130 1264 IPR029044 -
Cca04g00186 1692 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 581 1690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00186 Cca-Chr4 1695943 1709592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00186 549 1692 Glycosyltransferase AT3G03050 83.812 0.0 2023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00186 K20924 - gmx:100792604 2184.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00186 04 1695943 1709592 Cca06g01934 06 34613665 34618916 ECH
Cca04g00186 04 1695943 1709592 Cca04g00186 04 1695943 1709592 ECH