Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01866 ATGGCGAAGGCGGAGAACCGCACCAACCTAGCCTCGTGTTTCGTGGCCACCGTTTTCCTACTCTTCCTTCTCATCATCCTCTTCATCCTCTACTTCACGCTGTTCAAGCCGCAGGACCCCAAAATCGCCGTCAGCGCCGTCCAGATCCCATCCTTCTCCGTCACCAACGGCACCGTCAACTTCACGTTCTCGCAGTACGCCTCCGTTCGGAACCCCAACCGAGGCACCTTCTCCCACTACGACAGCTCGCTCCAGCTTCTCTACTACGGGAGACAGGTCGGATTCATGTTCGTTCCCGCCGGCAAGATCCACGCCGCCAGGACTCAGTACATGGCCGCCACCTTCACCGTCCAGTCCTTCCCCTTGGGCCTCGGGCCTGGTAATGTGATGGAGATCGTATCCAGAATAGCCATGGCGGGGCGCGTGAGGGTGTTGCACCTCTTCAGCCACCACGTGGAGGCCAAAGCTCAATGCAGGGTCGCCGTCGCCGTCACCGACGGAACCGTCTTAGGTTTTCGTTGCTGA 525 0.5943 MAKAENRTNLASCFVATVFLLFLLIILFILYFTLFKPQDPKIAVSAVQIPSFSVTNGTVNFTFSQYASVRNPNRGTFSHYDSSLQLLYYGRQVGFMFVPAGKIHAARTQYMAATFTVQSFPLGLGPGNVMEIVSRIAMAGRVRVLHLFSHHVEAKAQCRVAVAVTDGTVLGFRC 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01866 174 PANTHER LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN 4 174 - -
Cca06g01866 174 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 4 174 - -
Cca06g01866 174 Pfam Late embryogenesis abundant protein 68 158 IPR004864 -
Cca06g01866 174 SUPERFAMILY LEA14-like 20 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01866 Cca-Chr6 34083182 34083968 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01866 - - gmx:100820289 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01866 06 34083182 34083968 Cca06g01866 06 34083182 34083968 ECH
Cca06g01866 06 34083182 34083968 Cca09g02521 09 50731835 50732828 PCT