Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01853 ATGGCGCAGAAGAAATTCATCATTGAGGTGGAGAAAGCGCAGGAAGCGAGCCAGGGAAGGCCATCTCGTGGACCTGTCTATCGTAGCCTCTTCGCCAAGGATGGATTCCCTCCTCCCATCCAAGGCCTCGATTGCTGCTGGGACGTTTTCCGGTTGTCTGTTGAGAAATATCCGACAAGTCCTATGCTTGGTCAACGGGAAATCGTCGATGGGAAGGCTGGCAAGTACACGTGGCTAACATACAAAGAGGTATATGATCTGGTGATTAAAATTGGAAATTCTATCCGCAGCTGTGGTTATGGAGAAGGTGTAAAATGTGGTATTTATGGTGCCAATTGTGCAGAATGGATTATGAGCATGGAGGCCTGCAATGCTCATGGACTTTATTGTGTTCCTTTATATGATACCTTGGGTGCTGGGGCTGTAGAGTTTATTATATGCCATGCAGAGGTCTCAATCGCATTTGTAGAAGAAAAGAAGATACCTGAGCTATTGAAGACATTTCCAAAAGCAACAGAGTGTCTCAGGACAATTGTAAGCTTTGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAAGTTCGGGTTGGCAATATATTCATGGGATGAATTTTTACAAGTGGGTCAAAATCAGAGTTTTGATCTTCCTCTGAAGAAAAGGAGTGACATCTGTACAATAATGTATACTAGTGGAACTACTGGTGACCCCAAGGGAGTGTTGATATCAAATGAGGGTATTATTACTCTCTTAGCTGGGGTTAAGCGACTGTTGGAGAGTGTCAATGAACAATTGACTGAGAAAGATGTATACATATCATACCTCCCTCTTGCACACATTTTTGATAGGGTCATTGAGGAGACATTCATTTGGCATGGTGCTTCGATAGGTTTCTGGCGTGGGGATGTCAAATTGTTAATTGAAGATATTGGGGAACTTAAACCAACTATTTTCTGTGCTGTTCCCCGTGTGCTTGATAGAGTATACTCGGGTTTGACACAAAAGATTTCTTCCGGTGGCTTCTTAAAGAAGACATTATTCAACTTCGCATATTCATATAAGCTGAATAACATGAAGAAAGGGATTACACATGGAGAGGCATCTCCACTTCTTGATAAAATTGTGTTTGATAAGATAAAGCAAGGTTTAGGGGGTAGGGTACGTCTTATTTTGTCTGGAGCAGCACCTTTATCTGCACATGTGGAAGGTTACTTACGGGTTGTGACTTGTGCTCATGTCCTACAAGGATACGGTCTGACGGAAACTTGCGCGGGAACCTTTGTCTCTTTACCAAATGAAATGGATATGCTTGGAACAGTGGGCCCTCCTGTACCAAATGTGGACGTGTGTCTGGAATCTGTTCCTGAAATGGGGTACGATGCCCTAGCCAGCACACCAAGAGGAGAAATTTGTGTAAAAGGAAAAACCTTGTTTTCAGGGTATTACAAACGTGAAGACCTCACCAAAGAGGTTATGATCGATGGATGGTTCCATACAGGGGATATTGGAGAGTGGCAACCCAATGGAAGCATGAAAATTATTGATCGAAAGAAGAATATATTTAAGCTTGCACAAGGAGAATATGTTGCAGTTGAAAACCTGGAGAATATTTACAGTCAAGTTTCTTGTGTTGAATCTATATGGATTTATGGAAACAGTTTCGAGGCTTTCCTTGTTGCTGTTGTTAACCCTAGTAAGCAAGCGCTTGAACATTGGGCACAAGAAAATGGTATATCCACGGACTTCGATTCTCTCTGTGAAGATCCTAGAGCAAAACGTTACATAGTTGAAGAGCTCTCAAAGATCGCAAAGGAAAAGAAGTTGAAAGGTTTTGAGTTTATAAAAGGAGTTCACCTTGACCCAGTTCCATTTGACATGGAACGTGACCTTATCACTCCAACATATAAGAAGAAGAGGCCTCAGATGCTTAAATACTATCAGAATGCCATTGACAACTTGTACAAGAGTGGAAATAAACCCCGTGCCTGA 1989 0.4213 MAQKKFIIEVEKAQEASQGRPSRGPVYRSLFAKDGFPPPIQGLDCCWDVFRLSVEKYPTSPMLGQREIVDGKAGKYTWLTYKEVYDLVIKIGNSIRSCGYGEGVKCGIYGANCAEWIMSMEACNAHGLYCVPLYDTLGAGAVEFIICHAEVSIAFVEEKKIPELLKTFPKATECLRTIVSFGKVTPEQKQEVEKFGLAIYSWDEFLQVGQNQSFDLPLKKRSDICTIMYTSGTTGDPKGVLISNEGIITLLAGVKRLLESVNEQLTEKDVYISYLPLAHIFDRVIEETFIWHGASIGFWRGDVKLLIEDIGELKPTIFCAVPRVLDRVYSGLTQKISSGGFLKKTLFNFAYSYKLNNMKKGITHGEASPLLDKIVFDKIKQGLGGRVRLILSGAAPLSAHVEGYLRVVTCAHVLQGYGLTETCAGTFVSLPNEMDMLGTVGPPVPNVDVCLESVPEMGYDALASTPRGEICVKGKTLFSGYYKREDLTKEVMIDGWFHTGDIGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENIYSQVSCVESIWIYGNSFEAFLVAVVNPSKQALEHWAQENGISTDFDSLCEDPRAKRYIVEELSKIAKEKKLKGFEFIKGVHLDPVPFDMERDLITPTYKKKRPQMLKYYQNAIDNLYKSGNKPRA 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01853 662 Pfam AMP-binding enzyme 65 523 IPR000873 -
Cca06g01853 662 SUPERFAMILY Acetyl-CoA synthetase-like 43 655 - -
Cca06g01853 662 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 657 - -
Cca06g01853 662 ProSitePatterns Putative AMP-binding domain signature. 227 238 IPR020845 -
Cca06g01853 662 Gene3D - 43 516 IPR042099 -
Cca06g01853 662 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 4-LIKE 5 657 - -
Cca06g01853 662 CDD LC-FACS_euk 74 655 IPR045311 GO:0004467|GO:0006631
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01853 Cca-Chr6 33939883 33947992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01853 3 658 Acyl Lipid Metabolism Gene Families AT4G23850 74.543 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01853 K01897 - gmx:100814965 1258.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01853 06 33939883 33947992 Cca06g01853 06 33939883 33947992 ECH
Cca06g01853 06 33939883 33947992 Cca09g02512 09 50634267 50641683 PCT