Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01800 ATGCGCAGAAGATTATCTGCTTCCTGTTTCTTCTTTTCCCTCTTTTTCGTGTGTGAGAGAGTTCAGTGTTTCTCTCTGTTACCCTTGATTGCTCTTTTCTTGGGTTATACTCTTGGGGACTTTTTGTTCAAGTTTGGAGACAATGATTGTGTGTTGACGCTCTTTGGGTTTTCTTTTCTTCACTTCACTACTTCAGGCTCTAGTTTGTCGATGGGGCAAGAATTGGAGTTGGATCTGAATGACAAGTTTTTTGTGGTTCTAAGTCCAGATACTGTTCTTCCATCTCATCAATATTGTTTGAATGAGAAGAAAATATGTAAAAATGGGAAGCCCTCTGGGAAAGATGATTTTTTGAAACTGAAGGAGAATTTTGCTGATATCAAATTTGGTAGATTGCTCAATTCTTCATGGAAGAGCCTTCCCTGTAGATCTCATGGACTGGAAGGTAATGTAGAAATGAAACGAAGTTCCATGTATCAGAGTTCAGAGCAAGTAATAAATATAAAGAAAATGGGAACCATGAGGGGAAGGAAAAAAATAGAAATTTCATCTAGGAGTAGTGATGCCTCTTTTTCAGGTAGTGTTGTTGATTCTCTATGTTGTTCGGATGATGATGAGAGACCTTCAGTAGTATCTCAGGACTCAAATTTAGGTTCATCTCCATCTGTTTCTGGTTCCTGGCCTTGTATGGAGCATGACAATTCAAATGGCTATATTGAATTTTGCATTAATTCAGATGTTTGGGATGAAAAATATGGTGCAGTAAAAGGGTTTGGTTCTATAAATACTGAGATCAGAAATGACAAGGTTGCTGGTTCACTAACTGATGGTAATTGTCTTCTTCAGAAAGACACAGTTCATGGATTACAAAAGTCACTCTCTGCTATGGTTGAAATCTCTCACCTACAATCTCCATCAGAGAGTTACTGCTCACCAAGATCAAGTCCAAGAGTCTCATTCACCTCTATCAGGAAAAAGTTAAATCCGTTCACAAACTCAAAATCTGTGACAAGCCCTGTGAGTTGTGTGCTGGAAACTACTGAGGTCAAATTAACTGGAACTAGAAATGGCACAAGAAACAGGACTTATCAGAGATCTTTGCTGAATGACTTCTCTAACACGAGGAAGCATTCTGAGATTATTTCTGAGTTTATCAATAGAGATATCCAGTTTTCAGGTCTATCATGTTCACCAGTTCATCTTCATGGCAATCTCAAGTTGAAAAAGCAACAAGGACATCTATTTTTTGAGTTTAAGGTAAAGTGTCCTGAAGATGTCTTTGTGGCAAAGACATGGAAATCAGGCAATGCTTTCAATTGGATGTATACCTTTCACTCAATGGATAACAGAAAGAAAAGTACTTCTACTGCCACTGACTTGGCATCACGTTATAGTGACAAAGACTCATCAATGGTAGCACAAATGCTAGTTTCCTCTAATTTATGTTCCAAATTAGAAGGTGGAGTGTTTGCCAACTCTATGGTGACAACATTTGTGTTGTATGATCTTAGACACTCAAGAAAAAGTGTTTCACCTGAAAAAAAGTCTTGCAGCGAGCAACATTGTTCTAAAACTCTAAATGCTTCCCGTGTAGGAATGAAGGGAGAAACTTTCAGGCCAGATGAAGAGTCTTTGACAACTAAAAACAAGCTTCCATCAGGCAATACAGATTTTGATAATTCTAATTCTTATCCTTTGGCTTCCACAGAATTGCATTCAAACCCTGAAATTGCTGCAGTTGTTTTACAAATTCCATTTCACAAGAGAGAGAGCTTGAAATACAAAAGAAGGGGTGGAATAAATGCTGAAGCATATTCCAAACTAAGTGAACTCTCTTCAGCAGTAGAACAGGTGAAGGTGGTACTACCAACTGGCAACCATGTTTTGCCAGGTGCTGAAAGCCAGGGTCCCTCATCATTACTAGATAGATGGAAACATGGTGGAGGTTGTGATTGTGGTGGCTGGGACATGGCCTGTCCCCTTATTCTTTTAGGCAATCCCAGTGTTCAATTTACTGAAGATCGACCTCTTATGGAGGAATGTCAAACGCTGGAACTTTTCACTCAGGGTGCCAAGGAGAGAACTCCAACCTTTGGCATGACTATGGTTGAAGAGGGGCAATATGCAGTTGATTTCCATGCACAATTATGCCCATTACAAGCTTTCTCCATTTGTGTGGCCATTTTACATGGTGCGGGGCAGGAGAAAAAACAACAGATATCTCGATGCAATTCATTGAAAATGCTTCTTGAGGAGGAGCACTCAGTTGCGCCTAGTGCATCCATGCCTTCGGAGAAGACTTGCTGGAttcttttcttttctgttgttatttttcttctcCGTCATGCTCCTTCTGTTATAGCTGGGGACATAGTTCACGACGATGATTCAACTCCCAAGAAACCCGGTTGCGAGAACCAGTTCGTTCTGGTAAAAGTGCAAACTTGGGTCAATGGTGTAGAGGATGTTGAATTTGTTGGTGTCGGTGCAAGATTTGGCAGAGCGATTGTGTCTAAAGAGAGAAATGCACGGCACACGCGCCTTGTTCTTTCAGATCCTCGTGATTGTTGCAATCCACCAAAGAATAAGATTGTGGGAGATGTCATCATGGTGGATCGAGGCAACTGCACATTCACAAAAAAGGCAAATATTGCACAGAATGCTAATGCTTCAGCCATCCTCATTATAAATAACCAAAAAGAACTTTACAAGATGGTTTGTGAACCTGATGAAACTGATTTGAACATACACATACCGGCTGTCATGCTTCCGCTAGATGCAGGTACAAGGCTGGAAAAAATGCTGACGAGTACTTCATCTGTGTCTGTGCAGCTATACTCACCACTTCGACCAGCTGTTGACATAGCTGAAGTATTTCTTTGGATGATGGCAGTTCTTACTATATTGTGTGCATCATATTGGTCTGCTTGGACTGCCAGAGAAGCAGCTATTGAACAGGATAAGCTACTAAAGGATGCTTCAGATGATATCCCAAACACAAAATATGCTGGTGTTAGTGGAGTTGTAAATATGAATGTGAAAGCTGCAGTCCTTTTTGTTGTATTTGCTTCATGTTTCCTGTTTATGCTTTACAAACTGATGTCGTCATGGTTCATTGACGTTTTGGTTGTTCTCTTCTGTATTGGTGGAATTGAGGGCTTGCAAACTTGCCTGGTTGCTCTTTTGTCCAGGTGGTTCAAGAATGCTGGAGAGCCATGCATCAAAATACCTTTCTTAGGAGCTATCTCATACTTGACTTTGGCTGTTTCTCCATTCTGTACAGCATTTGCCGTTCTCTGGGCAGTTTATCGCAACCAATCCTTTGCCTGGATTGGTCAAGATATACTTGGAATTGCACTGATTATCACAGTTCTACAGATTGTACATGTACCAAATCTCAAGGTTGGTACAGTTCTTCTTGGTTGTGCCTTCATTTACGACATCTTTTGGGTGTTTGTCTCAAAGAAGTTTTTCAAGGAAAGCGTCATGATTGTGGTAGCCCGAGGTGATCGAAGTGGAGAAGATGGAATTCCCATGTTACTGAAGTTCCCACGCATTTTTGATCCATGGGGTGGGTACAGCATCATAGGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGGTACGATTGGCTGGCAAATAAGAGCCTTAGAGGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTGGTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGGGACCTTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTATTGTGGACAAGTGGAGAACCTGAAATACCGTGCCCACATATAAGACTTGATCAACAATTAAGCCCTGAATGCCATTAG 3915 0.4087 MRRRLSASCFFFSLFFVCERVQCFSLLPLIALFLGYTLGDFLFKFGDNDCVLTLFGFSFLHFTTSGSSLSMGQELELDLNDKFFVVLSPDTVLPSHQYCLNEKKICKNGKPSGKDDFLKLKENFADIKFGRLLNSSWKSLPCRSHGLEGNVEMKRSSMYQSSEQVINIKKMGTMRGRKKIEISSRSSDASFSGSVVDSLCCSDDDERPSVVSQDSNLGSSPSVSGSWPCMEHDNSNGYIEFCINSDVWDEKYGAVKGFGSINTEIRNDKVAGSLTDGNCLLQKDTVHGLQKSLSAMVEISHLQSPSESYCSPRSSPRVSFTSIRKKLNPFTNSKSVTSPVSCVLETTEVKLTGTRNGTRNRTYQRSLLNDFSNTRKHSEIISEFINRDIQFSGLSCSPVHLHGNLKLKKQQGHLFFEFKVKCPEDVFVAKTWKSGNAFNWMYTFHSMDNRKKSTSTATDLASRYSDKDSSMVAQMLVSSNLCSKLEGGVFANSMVTTFVLYDLRHSRKSVSPEKKSCSEQHCSKTLNASRVGMKGETFRPDEESLTTKNKLPSGNTDFDNSNSYPLASTELHSNPEIAAVVLQIPFHKRESLKYKRRGGINAEAYSKLSELSSAVEQVKVVLPTGNHVLPGAESQGPSSLLDRWKHGGGCDCGGWDMACPLILLGNPSVQFTEDRPLMEECQTLELFTQGAKERTPTFGMTMVEEGQYAVDFHAQLCPLQAFSICVAILHGAGQEKKQQISRCNSLKMLLEEEHSVAPSASMPSEKTCWILFFSVVIFLLRHAPSVIAGDIVHDDDSTPKKPGCENQFVLVKVQTWVNGVEDVEFVGVGARFGRAIVSKERNARHTRLVLSDPRDCCNPPKNKIVGDVIMVDRGNCTFTKKANIAQNANASAILIINNQKELYKMVCEPDETDLNIHIPAVMLPLDAGTRLEKMLTSTSSVSVQLYSPLRPAVDIAEVFLWMMAVLTILCASYWSAWTAREAAIEQDKLLKDASDDIPNTKYAGVSGVVNMNVKAAVLFVVFASCFLFMLYKLMSSWFIDVLVVLFCIGGIEGLQTCLVALLSRWFKNAGEPCIKIPFLGAISYLTLAVSPFCTAFAVLWAVYRNQSFAWIGQDILGIALIITVLQIVHVPNLKVGTVLLGCAFIYDIFWVFVSKKFFKESVMIVVARGDRSGEDGIPMLLKFPRIFDPWGGYSIIGFGDILLPGMLVAFSLRYDWLANKSLRGGYFLWAMFAYGFGLLVTYVALNLMDGHGQPALLYIVPFTLGTLMTLGRKRGDLRVLWTSGEPEIPCPHIRLDQQLSPECH 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01800 1304 Pfam PA domain 857 931 IPR003137 -
Cca06g01800 1304 SMART psh_8 1007 1274 IPR006639 GO:0004190|GO:0016021
Cca06g01800 1304 MobiDBLite consensus disorder prediction 547 566 - -
Cca06g01800 1304 PANTHER SIGNAL PEPTIDE PEPTIDASE 769 1298 IPR007369 GO:0004190|GO:0016021
Cca06g01800 1304 Pfam Domain of unknown function (DUF3527) 398 731 IPR021916 -
Cca06g01800 1304 PANTHER SIGNAL PEPTIDE PEPTIDASE-LIKE 2 769 1298 - -
Cca06g01800 1304 SUPERFAMILY PA domain 863 939 IPR046450 -
Cca06g01800 1304 MobiDBLite consensus disorder prediction 204 225 - -
Cca06g01800 1304 MobiDBLite consensus disorder prediction 211 225 - -
Cca06g01800 1304 MobiDBLite consensus disorder prediction 529 566 - -
Cca06g01800 1304 Pfam Signal peptide peptidase 1009 1285 IPR007369 GO:0004190|GO:0016021
Cca06g01800 1304 Gene3D - 817 948 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01800 Cca-Chr6 33381384 33395410 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01800 K09597 - ccaj:109801652 1477.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01800 06 33381384 33395410 Cca06g01800 06 33381384 33395410 ECH
Cca06g01800 06 33381384 33395410 Cca09g02430 09 49669035 49674193 PCT