Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01795 ATGACGACCGAATCCTCCAAGGATCCAAAGTCCTTGTACGACTTTGCTGTTAAGAATGCTAAGGGAGATGTTGTCGATCTCTCCACTTACAAGGGAAAAGTCTTGCTCATTGTCAATGTTGCTTCTAAATGTGGTTTGACCAACTCGAATTATGCGGAGCTGAATCAATTATATGAGAAGTATAAAGACGAAGGCCTGGAGATTCTGGCATTTCCATGTAATCAATTTGGTGAGCAAGAACCAGAAAGCAATGATAAAATTGTGGACTTTGTCTGCACTCGCTTCAAATCTGAATTCCCCATCTTTGATAAGATTGAAGTGAATGGGGAAAATTCTTCTCCTGTGTATAAATTCTTGAAGTCAGGGAAATGGGGTATTTTTGGGGATGATATTCAGTGGAACTTTGCCAAGTTTGTGGTTGATAAGAACGGACAAGTAGTGGGTCGCTACTATCCCACCACTTCTCCTCTCAGCCTTGAGCGAGACATCCGTCAGCTTCTGGGTATTGAGTGA 513 0.4211 MTTESSKDPKSLYDFAVKNAKGDVVDLSTYKGKVLLIVNVASKCGLTNSNYAELNQLYEKYKDEGLEILAFPCNQFGEQEPESNDKIVDFVCTRFKSEFPIFDKIEVNGENSSPVYKFLKSGKWGIFGDDIQWNFAKFVVDKNGQVVGRYYPTTSPLSLERDIRQLLGIE 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01795 170 PRINTS Glutathione peroxidase family signature 30 47 IPR000889 GO:0004602|GO:0006979
Cca06g01795 170 PRINTS Glutathione peroxidase family signature 66 82 IPR000889 GO:0004602|GO:0006979
Cca06g01795 170 PRINTS Glutathione peroxidase family signature 131 140 IPR000889 GO:0004602|GO:0006979
Cca06g01795 170 Pfam Glutathione peroxidase 12 120 IPR000889 GO:0004602|GO:0006979
Cca06g01795 170 PANTHER GLUTATHIONE PEROXIDASE 1 170 IPR000889 GO:0004602|GO:0006979
Cca06g01795 170 PANTHER GLUTATHIONE PEROXIDASE 1 170 - -
Cca06g01795 170 PIRSF Glutathion_perox 1 169 IPR000889 GO:0004602|GO:0006979
Cca06g01795 170 ProSitePatterns Glutathione peroxidases signature 2. 69 76 IPR029760 -
Cca06g01795 170 ProSitePatterns Glutathione peroxidases active site. 32 47 IPR029759 -
Cca06g01795 170 SUPERFAMILY Thioredoxin-like 11 167 IPR036249 -
Cca06g01795 170 ProSiteProfiles Thioredoxin domain profile. 6 168 IPR013766 -
Cca06g01795 170 CDD GSH_Peroxidase 11 163 IPR000889 GO:0004602|GO:0006979
Cca06g01795 170 Gene3D Glutaredoxin 1 169 - -
Cca06g01795 170 ProSiteProfiles Glutathione peroxidase profile. 2 170 IPR000889 GO:0004602|GO:0006979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01795 Cca-Chr6 33297924 33299838 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01795 K00432 - gmx:100527034 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01795 06 33297924 33299838 Cca06g01795 06 33297924 33299838 ECH
Cca06g01795 06 33297924 33299838 Cca09g02423 09 49593590 49595619 PCT