Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01773 ATGTGCCAGTTATCATCATCATCTTTGCGTGAGGGCGaggcaaaggcaaaggcaaaggcaaaCATGTCGGGTCTTTTGATTCCCGTAAGCCCAACATTGGAACATGAAAAGCCCCATAAAAGCAGTTTTTCCCTGGCTCTCCACGAAGCCAAATGCATAGCCAACATAGCACTCCCCATGGTCTTAACCGGTCTGTTACTCTACTCTCGTTCAATCATCTCCATGCTCTTCCTCGGCCGCGTGGGTGAGCTCGCCTTAGCGGGTGGCTCTCTAGCCATTGGATTCGCGAACATCACCGGTTACTCCCTTCTATCGGGCCTGGCCATGGGGATGGAGCCCATTTGCGGGCAGGCCTTCGGGGCCAAACGCTTCAAACTGTTGGGCCTGGCCATGCAGAGGACGGTGGTTCTGCTCCTTCTAACTTCACTTTTCATTTCATTCCTGTGGCTCAACATGAAGAAAATATTACTCGTGTGTGGCCAACAAGAGGACATTGCCACCGAAGCTCAATCTTTTATTCTTTATTCTCTCCCGGATCTCGTGGCGCAATCACTGCTACACCCTCTGCGAATCTACCTGCGGACTCAATCCATTACCCTGCCTCTCACCTACACTGCGTCTCTCTCTATTCTCCTCCACGTCCCCATCAACTACCTCCTCGTCTCTGTTATGAAACTCGGAATCAAAGGCATTGCCTTGGGCGCTGTTTGGACGAATTTCAACCTCGTGGTTTCGTTGATTCTCTACATATGGGTCTCCGGGGTGTATAAGAAGACATGGAGCGGTGTGTCGTTGAAGGGTATATTGAGGGGCTGGAAGGGGCTCTTGAATTTGGCGATTCCGAGTTGCATTTCCGTTTGCCTGGAATGGTGGTGGTACGAAATCATGATATTGTTGTGCGGCTTGTTGATTAATCCCCAAGCAACGGTGGCGTCCATGGGGGTTCTCATTCAAACCACTGCCTTGATATACATTTTCCCGTCTTCGTTGAGCTTCGGGGTTTCGACACGTGTCGGAAACGAACTCGGCGCGGGGAATCCCAAGAAGGCCAAAGTGGCGGCACTGGTGGGGCTGTGTTTCAGTTACGTCTTGGGATTCTCAGCTTTGTTTTTTGCCATTTCGGTAAGGCACGTGTGGGCGTCCATGTTCACACGTGACAAGGAGATCATTGTTTTGACGTCGGTGGTGTTGCCCATCATTGGGCTCTGCGAGCTTGGGAATTGCCCGCAAACGACGGTTTGCGGGGTTCTGAGGGGAACCGCCAGGCCCAAGTTGGGAGCGAATATTAATTTGGGGTGCTTTTACCTCGTGGGCATGCCCATTGCCGTCTGGTTGGGTTTCTTTGCGGGTTTTGACTTCAAAGGCTTGTGGCTCGGTTTGTTGGCGGCTCAAGCCTCTTGTATGGTTACCATGTTGTTCGTGTTGGCTCGCACCAATTGGGAGGGTCAGGTCCAACGAGCCAAGGAACTCACTTCCTCTGATTCCAGTgatgatgaagaagaagatgaagaagatgaggatgaggatgagaaATGCGCCTTCAGTTCATGCGCTGATTCCATGGTTTGA 1569 0.4952 MCQLSSSSLREGEAKAKAKANMSGLLIPVSPTLEHEKPHKSSFSLALHEAKCIANIALPMVLTGLLLYSRSIISMLFLGRVGELALAGGSLAIGFANITGYSLLSGLAMGMEPICGQAFGAKRFKLLGLAMQRTVVLLLLTSLFISFLWLNMKKILLVCGQQEDIATEAQSFILYSLPDLVAQSLLHPLRIYLRTQSITLPLTYTASLSILLHVPINYLLVSVMKLGIKGIALGAVWTNFNLVVSLILYIWVSGVYKKTWSGVSLKGILRGWKGLLNLAIPSCISVCLEWWWYEIMILLCGLLINPQATVASMGVLIQTTALIYIFPSSLSFGVSTRVGNELGAGNPKKAKVAALVGLCFSYVLGFSALFFAISVRHVWASMFTRDKEIIVLTSVVLPIIGLCELGNCPQTTVCGVLRGTARPKLGANINLGCFYLVGMPIAVWLGFFAGFDFKGLWLGLLAAQASCMVTMLFVLARTNWEGQVQRAKELTSSDSSDDEEEDEEDEDEDEKCAFSSCADSMV 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01773 522 MobiDBLite consensus disorder prediction 487 522 - -
Cca06g01773 522 TIGRFAM matE: MATE efflux family protein 59 457 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca06g01773 522 CDD MATE_eukaryotic 49 486 IPR045069 GO:0042910|GO:1990961
Cca06g01773 522 MobiDBLite consensus disorder prediction 494 512 - -
Cca06g01773 522 PANTHER MULTIDRUG RESISTANCE PROTEIN 31 501 - -
Cca06g01773 522 Pfam MatE 59 219 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca06g01773 522 Pfam MatE 281 444 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca06g01773 522 PANTHER PROTEIN DETOXIFICATION 31 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01773 Cca-Chr6 33024907 33027637 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01773 K03327 - gmx:100811560 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01773 06 33024907 33027637 Cca06g01773 06 33024907 33027637 ECH
Cca02g02291 02 43499963 43501896 Cca06g01773 06 33024907 33027637 ECH