Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02291 ATGTGCCATATAGCCTCCcacctgccctgcaaatgcaactgcaactgcaacGAGGAGACAGAGAATCAGCCGGACACGATGATCACGAACCCGTTGATCCAAAAGGATGAGCCAAGAAGAATGCGAACCCAGGTCATGAAAGAAGTAATCTCCATATCCAAAATAGCTCTCCCCATGATCCTCACGGGTCTATTACTATACTGCCGCTCAATGATCTCCATGCTCTTCCTGGGGCACCTCGGGGAACTCGCCCTCGCCGGCGGCTCCCTCGCCGTGGGGTTCGCCAACATCACTGGCTACTCCATCCTCTCGGGCCTCGCCGTCGGAATGGAGCCCATTTGCGGCCAAGCCTTCGGCGCCAAAAGATTCAGCCTTCTCGGCCTCTGCCTACAGAGAACCGTTGTTTTGCTTCTCTTCACTTCCATCCCAATCTCCCTCCTTTGGCTCTACATGAAGCACATCCTTCTCTTGTGTGGCCAGAACCAGGCCATAGCCACGCAAGCCCAAAAATATCTTCTTTTCTCCATCCCCGACCTCATAACACAATCCTTCCTACACCCCTTACGAATCTACCTTCGAACACAATCCATTACTCTGCCTCTCACCCTCTGCGCCGTTTTCTCCATTCTCCTCCACCTCCCCATCAACTACCTCCTCGTTTCCCACCTCAATTGGGGAATCAAAGGGGTCGCTCTCGCTGGAGTCTGGACTAATCTCAACCTTGTTGCTTCCTTAATTCTCTACATAGTCCTCTCTGGCACTCATAAGAAAACATGGGGAGGTTTTTCCTTCGAGTGTTTTACTCAGTGGAACTCGCTTCTCAATTTGGCTATTCCGAGTTGCATTTCCGTGTGCCTGGAATGGTGGTGGTATGAGATCATGATTCTGTTGTGTGGCTTGTTGGTGAATCCTAGAGCCACCGTGGCTTCCATGGGGATTTTGATCCAAACCACTTCTTTGCTCTACATTTTCCCTTCTTCAATAAGCTTCAGCGTCTCAACTAGAGTTGGGAACAAACTCGGCGCGCAGAAGCCCTCAAAGGCCAAACTTTCTGCTATAGTTGGCCTCTCTTGCAGCTTCGTGTTGGGTGTTTTGGCTTTGGTTTTCACCATTGTGGTTAGGAATGTTTGGGCCAGCATGTTTACAAATGACCAAGAGATAGTGAATTTGACATCATTGGTGTTGCCGATTATAGGACTTTGCGAACTCGGAAACTGTCCTCAAACAACGGGGTGCGGGGTGTTAAGAGGCACAGCGAGACCCAAAGTGGGTGCCAACATTAATTTAGGTTGTTTCTACCTCGTGGGAATGCCTGTTGCGGTTTGGCTTGGCTTCTACGCAGGGTTTGATTTTCAAGGCTTGTGGCTTGGGTTACTTGCTGCTCAGGGCTCTTGTGCTGTGACCATGTTGGTGGTTCTGAGTCAAACGGATTGGGATGGTGAGGCTCTGAGGGCTAAGACACTAACAAGtgttgttgttgttgttgATAACAGCAAGGAGATTGGTCCAGAGAAGCCGCACAAAGCTGAAATCAAGGAAGATTCTTTATCATTAGCGGATTCGGATCAAGATAAATAA 1578 0.4804 MCHIASHLPCKCNCNCNEETENQPDTMITNPLIQKDEPRRMRTQVMKEVISISKIALPMILTGLLLYCRSMISMLFLGHLGELALAGGSLAVGFANITGYSILSGLAVGMEPICGQAFGAKRFSLLGLCLQRTVVLLLFTSIPISLLWLYMKHILLLCGQNQAIATQAQKYLLFSIPDLITQSFLHPLRIYLRTQSITLPLTLCAVFSILLHLPINYLLVSHLNWGIKGVALAGVWTNLNLVASLILYIVLSGTHKKTWGGFSFECFTQWNSLLNLAIPSCISVCLEWWWYEIMILLCGLLVNPRATVASMGILIQTTSLLYIFPSSISFSVSTRVGNKLGAQKPSKAKLSAIVGLSCSFVLGVLALVFTIVVRNVWASMFTNDQEIVNLTSLVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYLVGMPVAVWLGFYAGFDFQGLWLGLLAAQGSCAVTMLVVLSQTDWDGEALRAKTLTSVVVVVDNSKEIGPEKPHKAEIKEDSLSLADSDQDK 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02291 525 PANTHER MULTIDRUG RESISTANCE PROTEIN 33 500 - -
Cca02g02291 525 Pfam MatE 58 218 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca02g02291 525 Pfam MatE 279 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca02g02291 525 TIGRFAM matE: MATE efflux family protein 58 455 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca02g02291 525 PANTHER PROTEIN DETOXIFICATION 33 500 - -
Cca02g02291 525 CDD MATE_eukaryotic 48 482 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02291 Cca-Chr2 43499963 43501896 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02291 K03327 - gmx:100777255 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02291 02 43499963 43501896 Cca06g01773 06 33024907 33027637 ECH
Cca02g02291 02 43499963 43501896 Cca02g02291 02 43499963 43501896 ECH