Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01707 ATGAGCACCCTCCCTAAAACTCAAGGGAAATCTGTCCCTGATGCCTCCGACTACAAGGGCCACCCCGCCGATAGGTCCAAAACCGGTGGCTGGACCGCTTCCGCCATGATATTAGGTGGAGAAGTGATGGAGAGGTTGACAACCCTCGGCATCGCCGTGAATTTGGTCACGTATTTAACCGGAACCATGCATTTGGGCAATGCTGCCTCTGCCAACGTTGTTACCAACTTCTTGGGAACCTCTTTCATGCTCTGTCTCCTCGGTGGTTTTCTCGCCGATACTTTCCTAGGAAGATACCGCACTATCGCCATCTTCGCAGCCGTTCAAGCAACTggtgtTACAATATTGACGATATCAACCATAGTTCCGAGCCTACACCCTCCGAAGTGCAAGGAAGAGACGGTGGCACCTTGCGTGCGAGCGAATGAGAAACAGTTAATGGTGCTTTATTTGGCGCTTTATGTGACGGCCCTTGGCACTGGGGGTTTGAAATCCAGCGTATCAGGGTTCGGTTCGGACCAGTTCGATGATTCGGATAGTGAAGAGAAGAAGCAGATGATAAAGTTCTTCAACTGGTTCTACTTCTTCGTGAGCATAGGGTCTCTGGCAGCAGTGACTGTTCTTGTGTACATACAAGACAACCAAGGACGAGGTTGGGGTTATGGTATTTGCGCAGGTGCCATTGTGGTGGCGCTTCTTGTGTTCTTGTCAGGTACGAGGAAGTACCGCTTCAAGAAACTTGTTGGAAGTCCACTAACTCAGTTTGCTGAAGTCTTTGTTGCTGCTCTTAGAAAGAGGAACATGGAATTACCCTCTGATTCATCGTTGCTCTTTAATGAGTATGACACCAAGAAGCAGACCCTGCCACGTAGCAAGCAGTTTCGTTTCTTGGACAAAGCTGCAATGATGGACTCATCAGAATGCGGTGGTGCAATGAAGAGGAAGTGGTATCTTTGCACCTTAACAGACGTGGAAGAGGTGAAAATGGTGCTAAGAATGCTACCCATATGGGCCACGACCATAATGTTTTGGACGATACATGCTCAAATGACCACATTCTCGGTGTCACAAGCGACCACCATGGACCGACACATAGGAAAAACATTTCAAATACCCGCGGCATCAATGACCGTTTTCTTAATCGGAACAATTCTCCTGACTGTTCCCTTCTACGACCGTTTCATTGTTCCCGTGGCAAGGAAAGTGCTGAAGAACCCACACGGGTTCAGCCCTTTGCAACGCATTGGTGTTGGTTTGGTTCTCTCAGTGTTCTCCATGGTGGCAGGGGCATTAGTAGAAATAAAGAGACTGAGATATGCACAATCACATGGTTTGGTAGACAAGGCAGCAAAGATTCCAATGACCGTGTTCTGGTTGATCCCACAGAATTTCTTAGTGGGGTCAGGGGAAGCATTTATGTACATGGGGCAGTTAGACTTCTTTCTTAGGGAGTGTCCCAAAGGGATGAAAACCATGAGCACGGGGTTGTTCTTGAGCACACTCTCCTTGGGCTTTTTCTTTAGCACCTTGTTAGTGTCAATAGTGAACAAAATGACAGCACATGGGAGGCCATGGCTTGCGGATAATCTTAACCAAGGGAGGCTCTATGACTTTTATTGGCTTTTGGCCATATTGAGTGCTATCAATGTGATGTTATACTTGGTTTGTGCAAAGTGGTACGTGTACAAGGACATGAGGCTTGCTGAGGAGGGCATAGAATTGGAAGAAGCAGATGAAGCTACTTTTCACGGCCATTGA 1758 0.475 MSTLPKTQGKSVPDASDYKGHPADRSKTGGWTASAMILGGEVMERLTTLGIAVNLVTYLTGTMHLGNAASANVVTNFLGTSFMLCLLGGFLADTFLGRYRTIAIFAAVQATGVTILTISTIVPSLHPPKCKEETVAPCVRANEKQLMVLYLALYVTALGTGGLKSSVSGFGSDQFDDSDSEEKKQMIKFFNWFYFFVSIGSLAAVTVLVYIQDNQGRGWGYGICAGAIVVALLVFLSGTRKYRFKKLVGSPLTQFAEVFVAALRKRNMELPSDSSLLFNEYDTKKQTLPRSKQFRFLDKAAMMDSSECGGAMKRKWYLCTLTDVEEVKMVLRMLPIWATTIMFWTIHAQMTTFSVSQATTMDRHIGKTFQIPAASMTVFLIGTILLTVPFYDRFIVPVARKVLKNPHGFSPLQRIGVGLVLSVFSMVAGALVEIKRLRYAQSHGLVDKAAKIPMTVFWLIPQNFLVGSGEAFMYMGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFFSTLLVSIVNKMTAHGRPWLADNLNQGRLYDFYWLLAILSAINVMLYLVCAKWYVYKDMRLAEEGIELEEADEATFHGH 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01707 585 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 88 112 IPR018456 GO:0006857|GO:0016020|GO:0022857
Cca06g01707 585 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 10 572 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca06g01707 585 PANTHER PEPTIDE/NITRATE TRANSPORTER 10 572 - -
Cca06g01707 585 MobiDBLite consensus disorder prediction 1 27 - -
Cca06g01707 585 Gene3D MFS general substrate transporter like domains 5 569 IPR036259 -
Cca06g01707 585 SUPERFAMILY MFS general substrate transporter 19 565 IPR036259 -
Cca06g01707 585 Pfam POT family 99 520 IPR000109 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01707 Cca-Chr6 32357226 32361301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01707 3 576 Organic Solute Cotransporters AT1G12110 62.051 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01707 - - gmx:100813789 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01707 06 32357226 32361301 Cca06g01707 06 32357226 32361301 ECH
Cca06g01707 06 32357226 32361301 Cca11g01630 11 40096968 40105630 PCT