Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01400 ATGGGGGACGTTAGGCAAGGTCAAACAAAGATTCAAAATGTTCCAATTGCTGTCACCCCTGAAGGATTTTGGTGTTGCCCTACTCCTGTTGGGTTTCAGAAAAGCCTCAAGCCTCAAAATCCTCTGAATAAACTCAAACCCTCTTCACCTCCTCCAAAGACTAGTTCCCAGAAAAAGGCAGTTGCAGTGAGTGAGAGAAAAGCAGTGCCTGCCCCATCAAAATTGGTGGTATCAGATGCTCAACAATGTAATGATCCCGAAAGACCTCCACCCAGCACTTCTGTGCCTACACAGAGAGCACCAAGACCCAAACTTGAATCTTTGCCCAAAAAGGTGGCTATTGAGTTTGGTAAACCTGGAACTTGTGACATGAAGGTGGTTCTCTTGGGAAAGCAGGGATTTTGTGTGAAGTTAAGTGTGCACAGGGATGTTTTAATAGAGAAGAGTAGTTTCTTTGCTGATAAACTTTCTGAACAATCTAGTTTGTCATGTCTCCAAGTTGATGACTGCGAGGATGTTGAAATTTATGTTGAAACTGTTGGCCTTATGTACTGCAAAGAAATGAAACAGAGGCTAATGAAGCAAAGCGTTTCTCGCATCCTTCGAATACTCAAGATTGCAGAATCCCTTGGCTTCAGCTCATGTATTCAATCATGTTTGGAGTACTTGGAGGCAGTCCCTTGGAATGGAGAGGAAGAGGAAGAAAAGGTGATCTCAACCGTCCTACGACTCCAAGGAGAAGGAATCGGTGTCAATCCGGTGCTAAAACGAGTTTCTCCTGATATTTCCAATGCCCCAAAAGACACTATATCCCACATTGTTGAACTTGTTCTCAAAAGCAATGAGGAGAGAGGTCGCAGAGAGATGAAATCCATAGTTCTAAAGCTCCTTAAGGAGAATAACAGTCTTCCAAGCTCTGCAGGTTCAGCTGATATCTGCAATGACATGATTTATAACTCATGCAGAAGCTGCTTGGATTCTCTATTGTGTCTGTTCAACCAAGCTGCTGAACCAGACTTTGCAGACAAGGAATCTGTAGGAAAACATATAGCTCTTGAAGCTGATAACTTGTCATGGCTACTTGAGATTTTAGTTGACAAACAAGCTGCTGAAGATTTTGCACTGATGTGGGCAAACCAGCAAGAATTGGCAGCCTTGCATGGAAAGCTTCCCATCGTCTTTCGCTATCATGTCAGCTGCATTTCTGGAAGACTATATGTTGGCATTGGAAGAGGGGAGGTTCTGCCATCGAAGAATGCGCGCCAGTTGTTGTTGCAGACGTGGCTGCAGCCTCTAATCAATGACTACAACTGGTTGCAGCACGGGTGCAGGTCGTTCGACAGAAAACTTGTGGAGGAAGGAATTGGAAGGACAATTCTCACCTTGCCTTTGGAGGATCAACAGAGTATTTTGCTTTCATGGGTTGGAAGCTTCTTGAAAACTGGTGATGGATGCCCCAATCTTCAGAGAGCTTTTGAGGTTTGGTGGAGAAGGACTTTCATTAGACCATATGTGGAGGGCCAAGGTAATGCCATGCCAGATAGTTGA 1548 0.4438 MGDVRQGQTKIQNVPIAVTPEGFWCCPTPVGFQKSLKPQNPLNKLKPSSPPPKTSSQKKAVAVSERKAVPAPSKLVVSDAQQCNDPERPPPSTSVPTQRAPRPKLESLPKKVAIEFGKPGTCDMKVVLLGKQGFCVKLSVHRDVLIEKSSFFADKLSEQSSLSCLQVDDCEDVEIYVETVGLMYCKEMKQRLMKQSVSRILRILKIAESLGFSSCIQSCLEYLEAVPWNGEEEEEKVISTVLRLQGEGIGVNPVLKRVSPDISNAPKDTISHIVELVLKSNEERGRREMKSIVLKLLKENNSLPSSAGSADICNDMIYNSCRSCLDSLLCLFNQAAEPDFADKESVGKHIALEADNLSWLLEILVDKQAAEDFALMWANQQELAALHGKLPIVFRYHVSCISGRLYVGIGRGEVLPSKNARQLLLQTWLQPLINDYNWLQHGCRSFDRKLVEEGIGRTILTLPLEDQQSILLSWVGSFLKTGDGCPNLQRAFEVWWRRTFIRPYVEGQGNAMPDS 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01400 515 MobiDBLite consensus disorder prediction 35 61 - -
Cca06g01400 515 Gene3D Potassium Channel Kv1.1; Chain A 116 244 IPR011333 -
Cca06g01400 515 PANTHER BTB/POZ DOMAIN PROTEIN 4 511 - -
Cca06g01400 515 MobiDBLite consensus disorder prediction 35 104 - -
Cca06g01400 515 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 4 511 IPR038920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01400 Cca-Chr6 28892319 28896742 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01400 - - gmx:100818853 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01400 06 28892319 28896742 Cca06g01400 06 28892319 28896742 ECH
Cca06g01400 06 28892319 28896742 Cca11g01231 11 31490631 31493593 PCT