Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01310 ATGGATGCGCCTCTTGAATGTTATCATCTTGTAGGTTCTTTCAAGCAGAAAGCCTCAAACATGCTGAGGAATTCTTTGAAAAGGGGTAGACGAAGCAGCAAAGTCATGTCAGTTGAAATCGAGGACGTCCACGATGCTGAGGAGTTGAAAATAGTTGACGAGTTCCGTCAAGCTCTTATTTTGGATGAACTACTCCCTGCAAAACACGATGATTATCACATGATGCTTAGATTCCTAAAGGCTAGGAAATTTGATATTGACAAAACAAAGCAAATGTGGTCTGAAATGCTCAAATGGAGGAAGGAATTTGGTGCTGACACTGTTACAGAGGACTTCGAATTCAAAGAAATCGATGATGTTTTGAAATACTATCCCCAAGGACATCATGGAGTGGACAAAGAAGGAAGACCTGTGTACATAGAGAGATTAGGCCAAGTCGATGCCGGGAAGCTGATGCAAGTCACAACCATGGATCGCTATGTCAAATATCATGTAAAGGAGTTTGAGAGGACATTCGATGTAAAGTTTGCAGCTTGTTCAATTGCTGCAAAGAAGCACATCGATCAAAGTACAACTATCCTGGATGTGGAAGGAGTGGGGCTTAAGAGCTTCAACAAGCATGCTAGGGAACTAGTTACTCGCCTTCAGAAGATCGACGGTGACAACTATCCCGAGACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATACTGTGGAACACCGTAAAATCATTCCTTGATCCTAAGACCACAGCAAAAATCAATGTTCTTGGCAACAAGTATGATAGCAAATTGCTAGAGATAATTGATGCAAGtgagttgcctgaatttttgggaggtacttgtacttgtgctgataaaggaggctgtatgcgctcagataagggcccatggaacgatccagaaataatgaagATGGTTCAGCATGGTGCTCACAAATGTTCAAGTAAAACTGAATCTGTTGATGAGGATGAGAAAAAACATTCTGAGGTCCCTGCTACTGAAGCTTTGAAGCCCGAGGAGCCTGCCACTCAACCTTCCAAGCCTGAGGAGCTTGCTACTAAACCTTCCAAGAAAGAGGACCTAACCCCAAAGCCTCATAAAATTGCTTCTAAAAAAGGTGACAAGGTTGAGTCACTTGCAGCATCAGCAGCGGAGTTTGCTGCTGTCATGAAACGCATGGCTGAGTTGGAGCAGAAATTGCTCAACATTAATAATCAGCCTACTTCCATGCCAGCTGACAAGGAGCAAATGCTCAAAGCAACTATTACTCGAGCAGATGACTTGGAGAAACAACTTTTGGCCACCAAGAAGGCTCTGGAGGATTCACTTGTAAAGCAAGAAGAGCTTTCGGCTTACGTGGAGAAAAAGAAACAGAAGAAGAAAAAGAGATTCTACTTCTTCTGA 1419 0.3975 MDAPLECYHLVGSFKQKASNMLRNSLKRGRRSSKVMSVEIEDVHDAEELKIVDEFRQALILDELLPAKHDDYHMMLRFLKARKFDIDKTKQMWSEMLKWRKEFGADTVTEDFEFKEIDDVLKYYPQGHHGVDKEGRPVYIERLGQVDAGKLMQVTTMDRYVKYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVEGVGLKSFNKHARELVTRLQKIDGDNYPETLNRMFIINAGSGFRILWNTVKSFLDPKTTAKINVLGNKYDSKLLEIIDASELPEFLGGTCTCADKGGCMRSDKGPWNDPEIMKMVQHGAHKCSSKTESVDEDEKKHSEVPATEALKPEEPATQPSKPEELATKPSKKEDLTPKPHKIASKKGDKVESLAASAAEFAAVMKRMAELEQKLLNINNQPTSMPADKEQMLKATITRADDLEKQLLATKKALEDSLVKQEELSAYVEKKKQKKKKRFYFF 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01310 472 Pfam CRAL/TRIO domain 122 284 IPR001251 -
Cca06g01310 472 SMART CRAL_TRIO_N_2 71 96 IPR011074 -
Cca06g01310 472 MobiDBLite consensus disorder prediction 356 379 - -
Cca06g01310 472 Gene3D - 104 316 IPR036865 -
Cca06g01310 472 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 11 360 - -
Cca06g01310 472 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 367 467 - -
Cca06g01310 472 CDD SEC14 117 285 IPR001251 -
Cca06g01310 472 Gene3D - 31 103 - -
Cca06g01310 472 SUPERFAMILY CRAL/TRIO domain 116 312 IPR036865 -
Cca06g01310 472 Coils Coil 384 411 - -
Cca06g01310 472 PRINTS Cellular retinaldehyde-binding protein signature 276 285 - -
Cca06g01310 472 PRINTS Cellular retinaldehyde-binding protein signature 74 96 - -
Cca06g01310 472 PRINTS Cellular retinaldehyde-binding protein signature 243 262 - -
Cca06g01310 472 SUPERFAMILY CRAL/TRIO N-terminal domain 44 112 IPR036273 -
Cca06g01310 472 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 11 360 - -
Cca06g01310 472 MobiDBLite consensus disorder prediction 319 339 - -
Cca06g01310 472 SMART sec14_4 116 287 IPR001251 -
Cca06g01310 472 Pfam CRAL/TRIO, N-terminal domain 68 94 IPR011074 -
Cca06g01310 472 MobiDBLite consensus disorder prediction 313 379 - -
Cca06g01310 472 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 367 467 - -
Cca06g01310 472 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 116 290 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01310 Cca-Chr6 27876738 27880839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01310 52 281 Acyl Lipid Metabolism Gene Families AT5G47730 29.098 9.37e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01310 - - ccaj:109801029 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01310 06 27876738 27880839 Cca06g01310 06 27876738 27880839 ECH
Cca04g00409 04 4118432 4124439 Cca06g01310 06 27876738 27880839 ECH