Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00409 ATGTGTGACACTATGTCGATACCTACTATAGATCGACCTGCTAAAGCTGGTCTTGAGAATATTGAATATTTAGAGGATGAAAAGAAGACGAAGCTCGGGTCTTTGAAAAAGGTAGCAATCAATGCATCTTCAAAGTTCAAACATTCCTTGCATAAGAAGGGGAGGAGGCATAGCAGGGTTATGTCTGTTGCTATTGAGGATGATCTTGATGCAGAAGAGTTGCAAGTAGTTGATGCTTTTCGTCAAACACTAGTCTTGGAAGAGCTATTACCCTCAAAACATGATGATCATCACATGATGTTAAGGTTCTTGAGGGCAAGGAAGTATGACATTGATAAAACAAAACAAATGTGGGCAGATATGCTTCAGTGGAGGGCAGAGTTTGGTGCTGACACCATCATGGAGGATTTTGAATTCAAGGAGATAGAAGAAGTTCTAAAATACTACCCACAAGGGCATCATGGAGTTGATAAGGAAGGGAGGCCTGTTTACATTGAAAGGTTGGGTCAGGTGGACTCTAACAAGCTGATGCAAGTAACAACTATGGATCGCTATCTTAAGTACCACGTAAGAGAATTTGAGAGGACATTCACTGTTAAGTTCCCTGCCTGTTCAATTGCAGCAAAGAAGCACATTGACCAAAGCACAACTATCTTGGATGTGCAAGGAGTGGGTCTCAAGAGTTTGAACAAAGCTGCAAGGGATCTCATCCAGCGTCTTCAGAAGATTGATGGTGACAACTATCCTGAGACCTTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTGTTGTGGAACACTATTAAGTCGTTCCTTGATCCTAAGACCACCTCAAAAATCCACGTACTAGGTAACAAATACCAGAGCAAGTTGCTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGTGGTACTTGTACTTGTGGAGACAAAGGTGGTTGTTTGCTTTCAGACAAGGGACCATGGAATGACCCAGACATCTTCAAGATGGTTCAAAATGGAGAAGGAAAATGCATGAGGAAAACCTTGTCCGGGATTGAAGAGAAAGCAATGCTTGACGACGAACCAACATTCCGAAAGGTATGCGATGTTTTTCTGCCAAAAGGGGGGCATGCCGAACTCGTTACTGCTCCAGATATCGCAGAACAGTTAACCTTTGTCCCTGTGATAGACAAGCCGGTCAATGCATCTTGGGAAAAAGCCGTACAAAATGATCAACTTGCACTTTCTAAAGATTGTTTACCTAGCAATGCTTCTAACGGGTTTAGAAATCCATTTACTGGCGGAATCATGGCCCTTCTTATGGGAATTATAACAATGATCCGCATGACAAAGAGCATGCCAAAGAAAGTCACTGAAGCTGCCTTTTATAGTAATCCAGTATATTCTGAAAGCAATATGATGAAAGCACCTGTTATTTCCGCTGATGATCAAATGGCCCTGATGAAGCGCATGGTTGAACTAGAAGAGAAGGTGAAAGTCCTCTCTATGAAACCTGCCATACCACCTGAACTGGAAGCAATGCTGAACAATGCTCTAAAGAGAGTCAGCACTCTAGAGCAAGAATTGGATACTACCAAAAAGGCACTTAATGATGCCCTTACTCGACAAGTGGATCTCCAAGCCCACGTTGCCAAAAAGAAAAAGAAGTTTTTCCGTTGGTAA 1680 0.4238 MCDTMSIPTIDRPAKAGLENIEYLEDEKKTKLGSLKKVAINASSKFKHSLHKKGRRHSRVMSVAIEDDLDAEELQVVDAFRQTLVLEELLPSKHDDHHMMLRFLRARKYDIDKTKQMWADMLQWRAEFGADTIMEDFEFKEIEEVLKYYPQGHHGVDKEGRPVYIERLGQVDSNKLMQVTTMDRYLKYHVREFERTFTVKFPACSIAAKKHIDQSTTILDVQGVGLKSLNKAARDLIQRLQKIDGDNYPETLNRMFIINAGSGFRLLWNTIKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCGDKGGCLLSDKGPWNDPDIFKMVQNGEGKCMRKTLSGIEEKAMLDDEPTFRKVCDVFLPKGGHAELVTAPDIAEQLTFVPVIDKPVNASWEKAVQNDQLALSKDCLPSNASNGFRNPFTGGIMALLMGIITMIRMTKSMPKKVTEAAFYSNPVYSESNMMKAPVISADDQMALMKRMVELEEKVKVLSMKPAIPPELEAMLNNALKRVSTLEQELDTTKKALNDALTRQVDLQAHVAKKKKKFFRW 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00409 559 SMART CRAL_TRIO_N_2 96 121 IPR011074 -
Cca04g00409 559 Coils Coil 226 246 - -
Cca04g00409 559 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 17 555 - -
Cca04g00409 559 Gene3D - 129 340 IPR036865 -
Cca04g00409 559 CDD SEC14 142 310 IPR001251 -
Cca04g00409 559 SMART sec14_4 141 312 IPR001251 -
Cca04g00409 559 SUPERFAMILY CRAL/TRIO N-terminal domain 67 137 IPR036273 -
Cca04g00409 559 Pfam CRAL/TRIO domain 147 309 IPR001251 -
Cca04g00409 559 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 141 315 IPR001251 -
Cca04g00409 559 PRINTS Cellular retinaldehyde-binding protein signature 99 121 - -
Cca04g00409 559 PRINTS Cellular retinaldehyde-binding protein signature 268 287 - -
Cca04g00409 559 PRINTS Cellular retinaldehyde-binding protein signature 301 310 - -
Cca04g00409 559 SUPERFAMILY CRAL/TRIO domain 141 337 IPR036865 -
Cca04g00409 559 Coils Coil 514 541 - -
Cca04g00409 559 Gene3D - 59 128 - -
Cca04g00409 559 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 17 555 - -
Cca04g00409 559 Pfam CRAL/TRIO, N-terminal domain 87 120 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00409 Cca-Chr4 4118432 4124439 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00409 102 306 Acyl Lipid Metabolism Gene Families AT5G47730 28.986 1.76e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00409 - - gmx:100792335 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00409 04 4118432 4124439 Cca04g00409 04 4118432 4124439 ECH
Cca04g00409 04 4118432 4124439 Cca06g01310 06 27876738 27880839 ECH