Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01079 ATGAAATTGAGGACTGTTGCTGCTAATAGACAAGCTTCTATGGGGGAGTTCACCGAGGGTGAGTATGTTACTGTCGGTGAATTACCTTCTCCAAGGGCAAATCACTCGCGGAAAGTTTCAGTTCTTCCTCTCGTGTTTCTCATCTTCTATGAAGTTTCAGGGGGTCCTTTTGGGGTGGAGGATACTGTGAATGCAGCTGGTCCTCTGTTAGCCCTCCTTGGATTCTTGCTTTTTCCATTGATATGGAGTGTTCCCGAGGCTTTGATTACTGCTGAGATGGGTACCATGTTCCCCGAAAACAGTGGTTATGTGGTTTGGGTTTCCTCTGCATTGGGTCCCTATTGGGGGTTTCAGCAGGGTTGGATGAAATGGCTGAGTGGGGTGATAGACAATGCTTTATACCCAGTTTTGTTTCTTGATTATCTGAAGTCAGGAATCCCAGCTTTAGGTAGTGGTTTGCCTAGAGTTGTTGCAACATGGGGTCTCACTATAGTTCTCACTTACTTGAACTATAGGGGTATGACCATTGTGGGATGGGTTGCTGTTTGTTTGGGTGTTTTCTCGCTCCTCCCTTTTGTAGTTATGGGATTGTTGGCAATTCCAGACATAGAGCCTTCAAGATGGGCTGTGACAAATCTAAATGATATTAACTGGAATTTGTATCTGAATACTCTGTTTTGGAATCTTAACTATTGGGACTCCATAAGTACTCTTGCTGGAGAAGTGGAAAATCCAAAGAAAACTCTTCCAAGGGCGTTGTTTTATGCTGTGATCTTAGTAGTTCTGGGGTACTTCTTTCCTCTTCTTATTGGTACTGGTGCTGTTGCTGTCGATCGGCAGTTGTGGACGGATGGCTACTTCTCAGATATTGCCTTGATTATTGGAGGAGCATGGTTGAGATGGTGGCTTCAGGCTGCTGCCGCAATGTCAAACATGGGAATGTTTGTTGCTGAAATGAGCAGTGATGCTTTCCAGCTTCTAGGGATGGCCGAGAGGGGAATGTTGCCTGAGTTCTTCGGCAAGCGATCTCGCCACGGAACACCTCTCATAGGAATCCTCTTTTCAGCTTCTGGTGTGATTTTACTGTCATGGCTGAGCTTTCAAGAAATTGTAGCTGCAGAAAATTTCCTGTACTGTTTTGGAATGATTTTGGAGTTTATCGCATTCATTCTGTTGAGGATCAAACATCCCAACGCCTCTCGGCCTTACAAGATACCAGGAGGAACGGCCGGAGCAATTCTCATGTGTATTCCTCCTACAATATTGATTTGTGTCGTGTTGTTTTTCTCCTCCGTTAAAGTAATGGTTATAAGCCTTATTGCTATGGCAATTGGCCTTGTGATGCAGCCTTGCCTCAAATATATGGAGAAAAAGAGATGGATGAAGTTTTCCCATAGTTCTGATCTCCCTGCTTTTGGGAATCAGGAGGATACTCGCTCTTTGGTGAATTAA 1452 0.4449 MKLRTVAANRQASMGEFTEGEYVTVGELPSPRANHSRKVSVLPLVFLIFYEVSGGPFGVEDTVNAAGPLLALLGFLLFPLIWSVPEALITAEMGTMFPENSGYVVWVSSALGPYWGFQQGWMKWLSGVIDNALYPVLFLDYLKSGIPALGSGLPRVVATWGLTIVLTYLNYRGMTIVGWVAVCLGVFSLLPFVVMGLLAIPDIEPSRWAVTNLNDINWNLYLNTLFWNLNYWDSISTLAGEVENPKKTLPRALFYAVILVVLGYFFPLLIGTGAVAVDRQLWTDGYFSDIALIIGGAWLRWWLQAAAAMSNMGMFVAEMSSDAFQLLGMAERGMLPEFFGKRSRHGTPLIGILFSASGVILLSWLSFQEIVAAENFLYCFGMILEFIAFILLRIKHPNASRPYKIPGGTAGAILMCIPPTILICVVLFFSSVKVMVISLIAMAIGLVMQPCLKYMEKKRWMKFSHSSDLPAFGNQEDTRSLVN 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01079 483 Pfam Amino acid permease 45 434 IPR002293 GO:0016020|GO:0022857|GO:0055085
Cca06g01079 483 PANTHER POLYAMINE TRANSPORTER PUT1 11 474 IPR044566 GO:0022857
Cca06g01079 483 PIRSF AA_transporter 18 478 - -
Cca06g01079 483 Gene3D Amino acid/polyamine transporter I 34 469 - -
Cca06g01079 483 PANTHER POLYAMINE TRANSPORTER PUT1 11 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01079 Cca-Chr6 24854693 24857381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01079 13 480 Organic Solute Cotransporters AT1G31830 75.264 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01079 - - gmx:100816567 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01079 06 24854693 24857381 Cca06g01079 06 24854693 24857381 ECH
Cca06g01079 06 24854693 24857381 Cca11g00894 11 18140982 18143070 PCT