LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca06g00971	ATGGCGGAGGAGAAGCGGTTCCGCGTCGGATACGCTTTAGCGCCCAAGAAGCAAAACAGCTTCATCCGAGACTCGCTCGTTAATCTCGCGAGATCTCGCGGCATAGACCTGGTTCGGGTGGACCCGACCCTCAACCTAACGGATCAGGGCCCATTCGATTGCGTCCTGCACAAGCTCTACGGCGACGATTGGAAGCGCCAGCTAACGGAATTCACCGCCAACTACCCTAATGCGGTCATCCTGGACTCGCCGGAATCGATCGAGAGGCTCCACAACCGGATTTCGATGCTGCAGGTCGTGTCGGAGCTGAGAATCGAAGACCCGAGCGAGACCTTTGGGATTCCGGAGCAGACTGTGATATACGACAAGGAGACGCTTGTCGACCAGCGGAGCTGGGAGGCGCTGAAGTTTCCGGTGATCGCGAAGCCGCTGGTGGCCGACGGCAGCGCGAAGTCGCACAAAATGGCGCTGGTTTTCAACCACGACGGGTTGAATTCGCTGAAGCCGCCGGTGGTGGTGCAGCAGTTCGTGAACCACGGCGGCGTGATCTTCAAGGTGTACGTGGTCGGGGAGCGCGTGCGGTGCGTGAAGCGGAAGTCCTTGCCGGACGTGGAGGAGGAGGAGTTGGTTAGGGTTTCGGAGGACTTGTTGTCGTTCTCGCAGGTGTCGAATTTGGCCACCGATGAGAGAATCGACGATAGGTATTATAAGAAGATGCAGTTGGATGATACCGAAATGCCTCCCCTGAGCTTCGTTACTCAGATAGCTCGGGGGTTGAGGCGCGTGATGAGGCTCAACCTGTTTAATTTCGATGTTATTAGGGATTCCCGATGTGGGAATCGTTACCTTATTGTTGATATCAATTACTTCCCCGGGTATGCAAAAATGCCCGGTTATGAGTCTGTTATGACAGACTTTTTCTGTGATGTGTTGTGCAAGAAACAGCAATGGGGTGATGAGTCTGAGGACTGTTCCGGGAATGCTGGTTTTGACAGTGTGGTGGTGCATGGTTGTGACAAAGACGCGAGGAGGATCATGAGCAATACTTGTGGTGACGAGGATGAGGGTAGCCTTCAAGTGTCGCCACTGGTGGAAGAGAAAGAGAGTTCTGTTCAAGTATGA	1122	0.5428	MAEEKRFRVGYALAPKKQNSFIRDSLVNLARSRGIDLVRVDPTLNLTDQGPFDCVLHKLYGDDWKRQLTEFTANYPNAVILDSPESIERLHNRISMLQVVSELRIEDPSETFGIPEQTVIYDKETLVDQRSWEALKFPVIAKPLVADGSAKSHKMALVFNHDGLNSLKPPVVVQQFVNHGGVIFKVYVVGERVRCVKRKSLPDVEEEELVRVSEDLLSFSQVSNLATDERIDDRYYKKMQLDDTEMPPLSFVTQIARGLRRVMRLNLFNFDVIRDSRCGNRYLIVDINYFPGYAKMPGYESVMTDFFCDVLCKKQQWGDESEDCSGNAGFDSVVVHGCDKDARRIMSNTCGDEDEGSLQVSPLVEEKESSVQV	373

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca06g00971	373	Gene3D	-	84	292	-	-
	Cca06g00971	373	PANTHER	INOSITOL-TETRAKISPHOSPHATE 1-KINASE	1	328	-	-
	Cca06g00971	373	Pfam	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain	8	87	IPR041429	-
	Cca06g00971	373	Pfam	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain	109	308	IPR040464	-
	Cca06g00971	373	PIRSF	ITPK	1	323	IPR008656	GO:0000287\|GO:0005524\|GO:0032957\|GO:0047325\|GO:0052725\|GO:0052726
	Cca06g00971	373	SUPERFAMILY	Glutathione synthetase ATP-binding domain-like	82	294	-	-
	Cca06g00971	373	MobiDBLite	consensus disorder prediction	349	373	-	-
	Cca06g00971	373	PANTHER	INOSITOL-TETRAKISPHOSPHATE 1-KINASE	1	328	IPR008656	GO:0000287\|GO:0005524\|GO:0032957\|GO:0047325\|GO:0052725\|GO:0052726

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca06g00971	Cca-Chr6	23447476	23449178	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca06g00971	K00913		-	gmx:100794373	616.69

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca06g00971	06	23447476	23449178	Cca06g00971	06	23447476	23449178	ECH
	Cca06g00971	06	23447476	23449178	Cca11g00816	11	15615956	15617750	PCT