Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00806 ATGCCAAACCTCCATTTCGCTCTCACCCTTTCGCTTCTTCTACTTTCCAATGCCTCAGCTGCACCTTCCACTACTCTACCCGCCAAGATCGTAACTGGGTTTCTCTCAAATGTCGTCCCCGCATTCACCAAATGGGTTTGGTCGCTCAAAGCACCCACCAAAACGGCGATTGGTGCGAAGTCGATGATGAAGTTCGAGAGTGGCTACACTGTGGAGACCGTGTTTGATGGAAGCAAGCTTGGAATTGAGCCTCACGCGGTTGAGGTGTTGTCTAATGGGGAGCTTCTCATTCTGGATTCTGTGAATAGTAACATTTATAGGATTTCCTCATCGCTTTCTTTGTATAGCAGACCGAAGCTGGTGGCAGGATCCGCTGAAGGATATTCTGGACATGTTGATGGAAGGCTTAGGGAGGCTAGGATGAATCACCCGAAGGGGATAACAGTTGATAACCGGGGGAATATCTATGTTGCAGATATAATGAATATGGCAATTAGGAAGATTAGTGATTCAGGCAAGCATTGGGTAACAACAATTGCTGGTGGAAAATGGAGCCGTGGAGGGGGGCATGTTGATGGTCCAAGTGAAGAAGCTAAATTTTCTAATGATTTTGATGTGGTTTATGTCGGAAGTAGTTGTTCTCTACTTGTCATAGACAGGGGGAACCAAGCCATCAGGGAAATCCAACTCCACTTTGATGATTGTGCTTATCAATACGAAAATGGATTTCCACTCGGAATTGCAATGCTTGTTGGGGCTGGCTTCTTTGGCTATATGCTTGCATTATTACAGCGTAGACTTGGTACAATTGCAGCATCTCAAGATGCTGAGGGTCCAACAATGTCTGCCGTTTCACCAAGTCCATATCAGAAGCCCTTAAAGTCTGTTAGGTCTCCTTTAATTCCATCCGAAGATGAATCTGATAAGCAAGAAGAAAGTTTCTTTGGGTCCATTGGGAAGCTTCTTGCCAATACTGGGGCATCAGTAGTGGAAATAGTGGGAGGGGTATTTCCTGGTTTAAGAACAAAACCACAGATCTATGAATTTCAAAGCCAACCACTGTTCCAGCAGCCTCAAAAGCAAGTAAATTCTTGGCCTGTGCAAGAAAGTTTTGTGATTCCAGATGAAGACGAGCCCCCTTCTATCGACCTAAGAACCCCGACACCACGAAAAACATACCCTTTCATGTACAAGGATGCAGAAAAAATGCAACAACTATGGCAAAGTCGAGCATTATACAACGgatgggagggagatcttcagcagcaacagcaacaactaaaacatcagcagcagcaacaacaacaacagttaaaacatcatcatcgccatcagcaccaTTCATCAATTCCTCACACTTACTATGAACAAAGCCATGAGCAAACCAATGAGATATTATTTGGAGCAGTGCAAGAGCAGGATGGGAAGCAGGAAACTGTAGTTATCAAGCCTGTGGATTATGGTCAATCTCTCTATGATCATCACTATATTCGGCCTCGAATCAGTTCCATGGGCTATATCCACAAAATTCGCACACACAACGCAACGCAAAAACTCGCTTCGTATCAGATCCGAATCTCTCTTCGTCTCGCCGATTCGGATCTCCGATTGATCTCCGTCTCCGATTCCTTCCCTTCGCAATTGGATCCGATTTCAGCTTCTCACCGTACACAATCATCGTCAATCATGAACCCGTTCTCTTCAGGAACGCGTTTGAGGGACATGATTCGGGCCATACGTGCTTGCAAGACTGCAGCAGAAGAACGAGCTGTTGTAAGAAAAGAATGTGCTGCCATACGTGCTGCAATAAATGAAAATGATCAAGACTATAGGCATCGGAATTTGGCTAAGCTAATGTTCATCCACATGCTTGGTTACCCCACTCATTTTGGTCAAATGGAATGCCTCAAGTTGATAGCATCTCCTGGATTTCCAGAGAAGAGAATAGGTTATCTTGGCCTCATGTTGCTTCTTGATGAAAGACAAGAAGTTCTAATGTTGGTCACCAATTCTTTGAAACAAGATCTTAATCACACAAATCAGTATATAGTGGGACTTGCTCTTTGTGCTTTAGGAAATATATGCTCAGCGGAAATGGCTCGTGATCTTGCACCAGAGGTTGAGAGATTGCTGCAATTTCGAGATCCAAATATTCGGAAGAAGGCAGCATTATGCTCTATAAGGATCATAAAGAAAGTTCCAGACTTGGCAGAAAATTTTATCAATCCTGCTACTGCCTTACTTAGGGAGAAGCATCACGGGGTTTTGATCACCGGGGTTCAGCTTTGTACAGATCTGTGTAAAATTAGCACTGAAGCTCTTGAACATATTAGAAAGAAATGCACAGATGGTTTGGTCAGAACTCTTAAGGATCTAGCCAATAGTCCATATTCACCAGAATATGATATTGCTGGTATCACGGACCCATTTCTCCACATCAGATTGCTTAAACTTTTGCGAGTGTTGGGTGAGGGTGACGCCGATGCTAGTGACTCCATGAATGACATACTTGCCCAGGTGGCTACGAAGACCGAGTCAAATAAAGTTGCAGGGAATGCCATTTTATATGAATGTGTCCAAACAATAATGAGCATCGAAGACAATGGTGGCTTACGTGTACTTGCCATTAATATCCTTGGAAGATTCTTGTCTAACCGTGACAACAATATCAGATATGTAGCATTAAACATGCTAATGAAGGCTGTATCTGCTGATGCTCAGGCAGTACAGAGGCACCGTGCAACAATTCTAGAATGTGTAAAGGATTCAGATGCTTCAATTCGGAAAAGAGCCCTTGAACTTGTTTATGTTTTGGTGAATGAGACTAATGTGAAGCCCTTGGCAAAAGAGCTTATAGATTATCTGGAAGTTAGTGATCTTGATTTCAGAGGGGACCTTACTGCCAAAATTTGCTCCATTGTAGCAAAGTTTTCCCCAGAGAAGATCTGGTACATTGATCAGATGCTCAAGGTTCTGTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTATGGTATGCCTTAATTGTTGTGATAAGCAATGCTTCTGAGCTTCATGGATATACAGTAAGAGCATTATACAGAGCATTTCAAACGTCAGCTGAACAGGAGTCTCTAGTTCGAGTTACAGTGTGGTGCATTGGGGAGTATGGTGACATGTTAGTCAATAATGTTGGAATGCTTGACATAGAAGATCCAATAACAGTGACCGAGTCTGATGCAGTTGATATTATAGAGATTGCTATAAAACGCCATGCATCAGATCTTACCACAAAAGCGATGGCTTTGGTTGCCCTATTAAAGCTCTCTTCACGTTTCCCTTCTTGTTCAGAGAGAATTAGAGAAATTATTGTCCAGTTCAAAGGGAGCTTTGTGCTAGAATTGCAGCAGAGAGCTATCGAATTCAATTCAATTATTGCGAAGCATCAAAATATCAGGTCTACACTCGTAGAAAGGATGCCAGTTTTGGATGAGGCAACTTTCATCGGTAGGAGGGCTGGGTCACTGCCAGGTGCAGCTTCAACTGCAACTATACCTTCAGTTAGTCTTCCTAATGGAGTAGCCAAACCTGTGGCTCCTCTTGTAGATCTACTTGATCTAAGTTCAGATGATGCTCCTGCACCTAGCTCTTCTGGTGGAGGAGATCTTCTTCAGGACCTTCTTGGTGTTGATCTGACACCTGCATCACAACAATCTGGTGCTGGCCAAGCTTCAAAAAGTGGCAACGATGTTCTTTTGGATCTTTTGTCTATTGGATCACCTTCTGTCCCAAGTAGCTCATCTGCAGTAGACATCTTATCCTCCAATTCAAGTAACAAAGCGCCAGTTTCACCATTGGATGATCTCTCATCCCTTTCACTTTCTTCAAAAACAACTTCAAATGCTGCTCCTATGATGGATTTATTGGATGGTTTGGCCTCCAGCCCACCAACAGAAAACAATGGACCAGTTTATCCATCTATAACTGCATTTGAGAGCAGCTCCTTGAGGTTGACGTTCAATTTCTCAAAACAACCAGGAAACCCACAAACAGCAGTTATCCAGGCTACTTTTATGAATTTGTCCTCTAATACATATACAGATTTTGTTTTCCAAGCAGCAGTTCCTAAGTTTCTTCAATTGCACTTGGATCCAGCTAGCAGCAATACTCTTCCTGCAGCTGGAAATGGGTCCATAACCCAAAATTTGAAAATTACTAATAGCCAGCATGGGAAGAAATCTCTTGTCATGCGTATAAGGATAGCATACAAGATAAATGGCAAGGATACACTGGAGGAAGGGCAAGTCAATAATTTCCCTCTTTTCAGGTTTCATTCCTTCAAATTAGGAAGGCGGTTTATGTACATTAGTACAAAATATTCCTGTATGAAAATGTCAAAGTCAAATTTTGCCTCTCAAGGTGGTGAGAGTTGTGTCATTGTTGAGTATTTGAGGTGCTTTCTTGCTATTTTTTCGGAGGTAGTCGCTCGGTCTTGCTGTCTGTCTAAAGTTATAGTGTTGTTGAATGCAATTTGA 4512 0.4171 MPNLHFALTLSLLLLSNASAAPSTTLPAKIVTGFLSNVVPAFTKWVWSLKAPTKTAIGAKSMMKFESGYTVETVFDGSKLGIEPHAVEVLSNGELLILDSVNSNIYRISSSLSLYSRPKLVAGSAEGYSGHVDGRLREARMNHPKGITVDNRGNIYVADIMNMAIRKISDSGKHWVTTIAGGKWSRGGGHVDGPSEEAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHFDDCAYQYENGFPLGIAMLVGAGFFGYMLALLQRRLGTIAASQDAEGPTMSAVSPSPYQKPLKSVRSPLIPSEDESDKQEESFFGSIGKLLANTGASVVEIVGGVFPGLRTKPQIYEFQSQPLFQQPQKQVNSWPVQESFVIPDEDEPPSIDLRTPTPRKTYPFMYKDAEKMQQLWQSRALYNGWEGDLQQQQQQLKHQQQQQQQQLKHHHRHQHHSSIPHTYYEQSHEQTNEILFGAVQEQDGKQETVVIKPVDYGQSLYDHHYIRPRISSMGYIHKIRTHNATQKLASYQIRISLRLADSDLRLISVSDSFPSQLDPISASHRTQSSSIMNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIKKVPDLAENFINPATALLREKHHGVLITGVQLCTDLCKISTEALEHIRKKCTDGLVRTLKDLANSPYSPEYDIAGITDPFLHIRLLKLLRVLGEGDADASDSMNDILAQVATKTESNKVAGNAILYECVQTIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAVSADAQAVQRHRATILECVKDSDASIRKRALELVYVLVNETNVKPLAKELIDYLEVSDLDFRGDLTAKICSIVAKFSPEKIWYIDQMLKVLSEAGNFVKDEVWYALIVVISNASELHGYTVRALYRAFQTSAEQESLVRVTVWCIGEYGDMLVNNVGMLDIEDPITVTESDAVDIIEIAIKRHASDLTTKAMALVALLKLSSRFPSCSERIREIIVQFKGSFVLELQQRAIEFNSIIAKHQNIRSTLVERMPVLDEATFIGRRAGSLPGAASTATIPSVSLPNGVAKPVAPLVDLLDLSSDDAPAPSSSGGGDLLQDLLGVDLTPASQQSGAGQASKSGNDVLLDLLSIGSPSVPSSSSAVDILSSNSSNKAPVSPLDDLSSLSLSSKTTSNAAPMMDLLDGLASSPPTENNGPVYPSITAFESSSLRLTFNFSKQPGNPQTAVIQATFMNLSSNTYTDFVFQAAVPKFLQLHLDPASSNTLPAAGNGSITQNLKITNSQHGKKSLVMRIRIAYKINGKDTLEEGQVNNFPLFRFHSFKLGRRFMYISTKYSCMKMSKSNFASQGGESCVIVEYLRCFLAIFSEVVARSCCLSKVIVLLNAI 1503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00806 1503 SUPERFAMILY ARM repeat 587 1155 IPR016024 -
Cca06g00806 1503 MobiDBLite consensus disorder prediction 275 292 - -
Cca06g00806 1503 MobiDBLite consensus disorder prediction 423 457 - -
Cca06g00806 1503 Pfam Adaptin C-terminal domain 1318 1432 IPR008152 GO:0006886|GO:0016192
Cca06g00806 1503 Gene3D - 554 1156 IPR011989 -
Cca06g00806 1503 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 567 1432 - -
Cca06g00806 1503 SMART alpha_adaptinc2 1312 1432 IPR008152 GO:0006886|GO:0016192
Cca06g00806 1503 SUPERFAMILY NHL repeat 72 230 - -
Cca06g00806 1503 MobiDBLite consensus disorder prediction 275 309 - -
Cca06g00806 1503 Gene3D - 44 229 IPR011042 -
Cca06g00806 1503 Coils Coil 413 440 - -
Cca06g00806 1503 Gene3D - 1299 1436 - -
Cca06g00806 1503 MobiDBLite consensus disorder prediction 1259 1284 - -
Cca06g00806 1503 PANTHER AP-1 COMPLEX SUBUNIT GAMMA 567 1432 - -
Cca06g00806 1503 Pfam Adaptin N terminal region 589 1140 IPR002553 GO:0006886|GO:0016192|GO:0030117
Cca06g00806 1503 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 1315 1432 IPR008153 -
Cca06g00806 1503 SUPERFAMILY Clathrin adaptor appendage domain 1291 1434 IPR013041 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00806 Cca-Chr6 20978357 20999291 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00806 K12391 - gmx:100802164 1526.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00806 06 20978357 20999291 Cca06g00806 06 20978357 20999291 ECH
Cca06g00806 06 20978357 20999291 Cca11g00654 11 10750983 10754809 PCT