Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02011 ATGATGAGAAGACACACCCTTTTGACTCAATCCCCAAAACGATTGTCCCTCTTCTTTGTTGGTCACAACCACCCAACTGATCCACACTCCCTTGTAACTCAATCACCAAAACAAGTCTCCCAAATCCATCATCATTGGTGTGGTCACCCCAAAACCTTAAAACCCACTTTCACTTTCAACAACTTGCACACTGGTTCCACAGTGGAAGAACCAGTTGAAGTGGATGAGGTTGAATTCGATGTGTGGTTAAAGATGCAAGAGGAAGCTAGACTCGATGTCACTGTGGAACCAATCTTGTCTAGTTACTACCACACTTCCATTCTCTCTCACAAATCATTACCAACCGCGTTGGCCAACCACCTTGCCATCAAACTCAGCAGTGAAAGCCTTCCAAGTGCCACACTTTCTCATATTTTTGTCACAGTTCTGGAAGATGATCAAGCCGTCATGGATTCTGTTAAGTGTGATCTGAGGGCAGTGAAGGAGAGAGACCCTGCATGCATATCTCACGTGCACTGCTTCTTGAACTTCAAAGGCTTTCTTTCATGTCAGGCTCATAGGGTGGCTCACAATTTGTGGCTTCAGGGGAGAAGGATTCTAGCTGTCATGATCCAGAATCGTGTTTCTGAAGTTTTTGGGGTGGATATTCATCCTGGGGCTAAAATTGGAAGTGGGATTTTGCTGGATCATGCAACTGGGATTGTGGTGGGAGAAACGGCTGTGATAGGGAACAATGTGTCAATTTTGCATAGTGTGACTTTGGGAGGGACTGGTAAGGTTTCGGGGGATAGGCATCCTAAGATTGGTGATGGGGTGCTCATAGGTGCAGGAACTTGTATCTTGGGAAATATTAGGGTTGGTGAGGGGGCTAAGATTGGTGCTGGCTCTGTGGTCATCAAGGATGTGCCTCCAAGGACTACTGTTGTCGGGAACCCGGCTAAGCTGGTTGGAGGGAAGAACAACCCTGTTAAGTTGGATAAGATTCCTAGCTTCACCATGGACCATACTTCAAATATTTCTGAATTTTATGATTATTGTGTTTAG 1044 0.4559 MMRRHTLLTQSPKRLSLFFVGHNHPTDPHSLVTQSPKQVSQIHHHWCGHPKTLKPTFTFNNLHTGSTVEEPVEVDEVEFDVWLKMQEEARLDVTVEPILSSYYHTSILSHKSLPTALANHLAIKLSSESLPSATLSHIFVTVLEDDQAVMDSVKCDLRAVKERDPACISHVHCFLNFKGFLSCQAHRVAHNLWLQGRRILAVMIQNRVSEVFGVDIHPGAKIGSGILLDHATGIVVGETAVIGNNVSILHSVTLGGTGKVSGDRHPKIGDGVLIGAGTCILGNIRVGEGAKIGAGSVVIKDVPPRTTVVGNPAKLVGGKNNPVKLDKIPSFTMDHTSNISEFYDYCV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02011 347 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 274 302 IPR018357 GO:0016740
Cca05g02011 347 SUPERFAMILY Trimeric LpxA-like enzymes 81 316 IPR011004 -
Cca05g02011 347 Pfam Serine acetyltransferase, N-terminal 81 185 IPR010493 GO:0005737|GO:0006535|GO:0009001
Cca05g02011 347 TIGRFAM cysE: serine O-acetyltransferase 153 314 IPR005881 GO:0005737|GO:0006535|GO:0009001
Cca05g02011 347 SMART SATase_N_2_a 81 185 IPR010493 GO:0005737|GO:0006535|GO:0009001
Cca05g02011 347 Gene3D serine acetyltransferase, domain 1 64 214 IPR042122 -
Cca05g02011 347 PANTHER SERINE ACETYLTRANSFERASE 58 346 - -
Cca05g02011 347 Gene3D Hexapeptide repeat proteins 215 336 - -
Cca05g02011 347 CDD LbH_SAT 212 312 IPR045304 -
Cca05g02011 347 Pfam Bacterial transferase hexapeptide (six repeats) 265 299 IPR001451 -
Cca05g02011 347 PANTHER SERINE ACETYLTRANSFERASE 1, CHLOROPLASTIC 58 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02011 Cca-Chr5 39988290 39989855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02011 81 343 Miscellaneous Gene Families AT2G17640 52.471 2.36e-88 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02011 K00640 - gmx:100820316 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02011 05 39988290 39989855 Cca05g02011 05 39988290 39989855 ECH
Cca09g01198 09 33785065 33786375 Cca05g02011 05 39988290 39989855 PCT