Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01993 ATGAGGCAAATCAGTAATGCAGAAACTGCAGAGGCTCGTTTCTCAACCACCATTTCCTCTTCATCTCTCAGAAACCTTCTTCCCAGATCACTCTCTTCCAAGCACAAACCCACTCCAAACCCTAAAATCCCAAATTCAGATGCAGAGAACACTCCCCCCACCCATCCCAACATCCAGAACAACCGTGAACAATCCTTGTCTTCCTCAGCCAACCAATCACACTCCAAAACCTCAATTTCTCAGAATAACCTCGACCAATCGAAATCCCCTCTCAAATCCGACCCATCAGTCAAGGTTGTGGTGCGAATCAGACCTACCAATAACAATGGAATAGAGGTAGATCGAACCGTTAAGAAGGTTTCTTCGAATACCTTGTGGGTTGGGGATAGGCAATTTACCTTTGATTCAGTCTTTGATTCGAACACCAATCAGGAAGATATTTTTCAGTCAGTTGGTGTCCCTTTGGTTAAAAATGCTTTAGCTGGTTACAACACTTCAATTCTGTCATATGGCCAGTCTGGAAGTGGAAAGACTTATACCATGTGGGGTCCCCCAAGTGCCATGTTTGAGGAGCTCTCGCCCCAAAGTCACAAGGGAATTGTTCCTAGGATCTTTCAAATGTTGTTTTCTGAGCTTGACAAAGAGCAGCATGTGTCTGAGGGGAAACTATTTAACTACCAATGTCGATGTTCTTTCCTTGAGATATACAATGAACAAATTGGGGATTTACTTGATCCAACCCAGCGGAACCTTGAGATTAAAGATGATTCAAAAAATGCATTCTATTTAGATAATCTGACTGAGGAATATGTCACTAGCTATGATGACGTGACACAATTTCTGATTAAGGGCCTTTCAAGCAGAAAAGTTGGAGCAACAAGCTTAAATTCTAAGAGCTCTAGATCACATATCATTTTCACTTTTGTGATTGAATCTTGGTGCAAGGGAATATCATCAACCGGTTTCAGTAGTTCAAAATCTAGCAGAATTAGCCTTATCGATCTTGCTGGACCGGACAGGAACAAAGTTGAGGATGCAGGCAAGCAATGTCTGAAAGAAAGCAAAAATGTAAAGAAGTCCTTATCTCGGTTAGGGCACGTAGTAGATGCCCTGACTAAAGAAACTCACTCGGGAAAAGCAGAAGAAATTTTAAACAGGAATTCCTGTTTAACCCGTTTACTACAAGAATCACTTGGTGGAAATGCCAAACTCTCCGTAATCTGTTCCATCTCCCCTGATAACAGGAATAATGGTGAAACACTGCGCACACTCAGGTTTGGACAGCGAATAAGAAACATTAAAAATGAACCTGTTATCAATGAAATAAAGGAGGATGATGTTAACGATTTAAGTGATCAAATCCGGCAACTGAAGGAAGAACTCATTAGAGCAAAGGCTGAGGTTCATAGCTCAGGTGGGAGTAAAAATGGATACTCTCAAGTACGTAATGTACGGGACAGCCTTAATCAGTTGCGAGTCAGCTTAAACCGCTCTCTACTCCTGCCTCGCATTGATAATGACAATGATGAAGAGGTAAATGTGGATGAGGAAGACATAAGGCAATTACGCCTGCAGATTGATGAACTGTATCATTCGTGTGATGGGAATCCTACAAACGTATCTGTCAGTGAAGATTGTGACCAGTATTATTCAGTTGCAGAAAATTGTGATACAGATATGACTAGTGGTGATGAAATAGAAAAGGAGGAAGTATGTTTTGGAGAAACACTCAGTAAGCTTTGTCCTGAGGAAAGTGAGGGGTCAACAGCCTCCTTGTATACATCAGTAGATGAATTTGCATGCACAGGTAATGCCTCAAGGACAATTAAATCTTCATTCAGAGATAGCATTTCAGTTAGTTCATGTAGTCGATCTCCAATACTTGAGGAACCACAGTTGTCCGAGTCCCCCAAAATCAGGAATGTCCAGAGGAAAAGTGTGGCTTATTCACCAAGTTGTCTTGGAAGTTGGAACAATGTGGTAGAGGAAACTTTGAGATCCAGTAAAGATATATTAGGACAATCAATTAAAGAGGGAGAGCAGCTGCGATCATCACTACGGTCAAGCAAGGTTTTTCCAGGTCCTACTGAATCCTTGGAGGCAAGCCTTCAGAGGGGATTGCAGATAATTGATTATCACCAGAGAAACTCAGCATTAAACAAATCTTCATCTTCATTCTCTTTTGGGAACTTAACCTTGACACCTTGTCCAGAAATAGACAAGGGTGATTCTTGCGATCAAATAATGCAACAGAAGAAATATTGTGTCGATGAAAGAACTGCAACTTTGCTTTGTGAAGCTTGCCGTAAAAGAGTATATGATCAGGATTCTAGTGAGGTTCGAGATAGCTTAAAGTCATGCATTCAAACAGCTGAAGCAGGAAATTCGGACGGACTGACAGATAAGGCTCAAAAAGATTTACAGAGTATAATGGAAAAGGCAATCATGAGAGAAAAGGAGCTAGAGAATGTTTGCAAGGAGCAAGCTTCTAGAATTGAAGAACTAAATCAATTGGTGGAGAAATTGAAAGGAGAAAAAGAACTAAAATCCTCCATCATTGTGTGTGATCAAGAAAGCAACAAACAGACCAGACATGTAGAAGAGTATAACTCATTGAAAGATGAAGACAAGCTTCTAATAAAGGGTACTTCCTCAGTCAGACATTTACCAGATCTTATAGAGGAAAAGTGTGAAATTAAAGAAGTTCGGGAAGAAGTAACTCAAAGAGACAGCTCTTTTGATGCAGTCGAGAAGGAAGATCTCCTCAAAGAAATTCAGAATCTAAGAAGCAAGCTGCTAGTACACAGCGATGCACCAGTTAAGAAGTCCACTGACAAGCTAAGGTCTTCCTTATCATTAATGTCAAGATCCATTCAACTGCGTAAAAGCAGTCTATTTTCTCGTGATAATGGTGgagatgagctagagaaagagagacagagatggacagaaatggaaagtgagTGGATTTGTCTTACTGATGAACTAAGAGTTGATCTTGAGTCCAACCGCCAGCGGGCAGAGAGGTTGGAGATGGAACTGAGTCTAGAGAAGAAGTGCACAGAAGAGTTAGATGATGCACTAAAAAGAGCGGCGCTTGGACATGCTAGAATGGTGGAGCACTATGCTGACCTCCAAGACAAATATAATGATTTGGTTGCTAAGCACAATGCTATAATGGAAGGCATAGCAGAGGTGAAGAAGGCAGCGGCAAAGGCTGGAAAAAAGGGTCATGCTCGTTTCGCCAAAGCTCTTGCTGCCGAACTTTCTGCACTAAGGGTGGAGAGAGAAAGGGAAGCAAAATTCTTGAAAAAGGAGAACATGAATCTCAAGATTCAACTTAGAGAAACTGCAGAAGCTGTTCATGCTGCTGGAGAACTACTTGTTAGATTAAGAGAAGCTGAGCATGCAGCGTCCATTGCAGAGGAGAATTTCACAAAAGTGCAACACGATAATGAAAAGCTAAAAAAGCAAATGGACAAGATCAAAAGAAAGCACAAGATGGAGATGATTACCATGAAGCAGTACCTTGCAGAGAGCAAATTACCCGAGTCGGCACTGCAGCCACTATATAGAGAGGATTCTGATGTGGTTCACAAGGATTCAACTTCCCATCCAGATGACGATCAAGCATGGAGAGTAGAGTTTGGAGCAATCTATCAGCAACATTATTAA 3675 0.4073 MRQISNAETAEARFSTTISSSSLRNLLPRSLSSKHKPTPNPKIPNSDAENTPPTHPNIQNNREQSLSSSANQSHSKTSISQNNLDQSKSPLKSDPSVKVVVRIRPTNNNGIEVDRTVKKVSSNTLWVGDRQFTFDSVFDSNTNQEDIFQSVGVPLVKNALAGYNTSILSYGQSGSGKTYTMWGPPSAMFEELSPQSHKGIVPRIFQMLFSELDKEQHVSEGKLFNYQCRCSFLEIYNEQIGDLLDPTQRNLEIKDDSKNAFYLDNLTEEYVTSYDDVTQFLIKGLSSRKVGATSLNSKSSRSHIIFTFVIESWCKGISSTGFSSSKSSRISLIDLAGPDRNKVEDAGKQCLKESKNVKKSLSRLGHVVDALTKETHSGKAEEILNRNSCLTRLLQESLGGNAKLSVICSISPDNRNNGETLRTLRFGQRIRNIKNEPVINEIKEDDVNDLSDQIRQLKEELIRAKAEVHSSGGSKNGYSQVRNVRDSLNQLRVSLNRSLLLPRIDNDNDEEVNVDEEDIRQLRLQIDELYHSCDGNPTNVSVSEDCDQYYSVAENCDTDMTSGDEIEKEEVCFGETLSKLCPEESEGSTASLYTSVDEFACTGNASRTIKSSFRDSISVSSCSRSPILEEPQLSESPKIRNVQRKSVAYSPSCLGSWNNVVEETLRSSKDILGQSIKEGEQLRSSLRSSKVFPGPTESLEASLQRGLQIIDYHQRNSALNKSSSSFSFGNLTLTPCPEIDKGDSCDQIMQQKKYCVDERTATLLCEACRKRVYDQDSSEVRDSLKSCIQTAEAGNSDGLTDKAQKDLQSIMEKAIMREKELENVCKEQASRIEELNQLVEKLKGEKELKSSIIVCDQESNKQTRHVEEYNSLKDEDKLLIKGTSSVRHLPDLIEEKCEIKEVREEVTQRDSSFDAVEKEDLLKEIQNLRSKLLVHSDAPVKKSTDKLRSSLSLMSRSIQLRKSSLFSRDNGGDELEKERQRWTEMESEWICLTDELRVDLESNRQRAERLEMELSLEKKCTEELDDALKRAALGHARMVEHYADLQDKYNDLVAKHNAIMEGIAEVKKAAAKAGKKGHARFAKALAAELSALRVEREREAKFLKKENMNLKIQLRETAEAVHAAGELLVRLREAEHAASIAEENFTKVQHDNEKLKKQMDKIKRKHKMEMITMKQYLAESKLPESALQPLYREDSDVVHKDSTSHPDDDQAWRVEFGAIYQQHY 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01993 1224 ProSiteProfiles Kinesin motor domain profile. 96 433 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g01993 1224 Coils Coil 1138 1165 - -
Cca05g01993 1224 MobiDBLite consensus disorder prediction 1 102 - -
Cca05g01993 1224 PANTHER KINESIN-LIKE PROTEIN KIN-12F 75 1224 - -
Cca05g01993 1224 Coils Coil 993 1017 - -
Cca05g01993 1224 Coils Coil 818 852 - -
Cca05g01993 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 467 IPR027417 -
Cca05g01993 1224 Gene3D Kinesin motor domain 93 473 IPR036961 -
Cca05g01993 1224 PANTHER CENTROMERE PROTEIN E 75 1224 - -
Cca05g01993 1224 Coils Coil 440 467 - -
Cca05g01993 1224 SMART kinesin_4 94 441 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g01993 1224 Coils Coil 1086 1120 - -
Cca05g01993 1224 Pfam Kinesin motor domain 88 433 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g01993 1224 PRINTS Kinesin heavy chain signature 162 183 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g01993 1224 PRINTS Kinesin heavy chain signature 293 310 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g01993 1224 PRINTS Kinesin heavy chain signature 383 404 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g01993 1224 PRINTS Kinesin heavy chain signature 329 347 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g01993 1224 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01993 Cca-Chr5 39824573 39830808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01993 90 461 Miscellaneous Gene Families AT5G06670 34.197 1.23e-52 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01993 K10400 - gmx:100806960 1984.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01993 05 39824573 39830808 Cca05g01993 05 39824573 39830808 ECH
Cca09g01170 09 33172192 33177966 Cca05g01993 05 39824573 39830808 PCT