Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01953 ATGAACAAGTTTAACAAATCTGAAGTTCTAGTGCTCATTGTACTAGGTCTTCTCCTTGGGATCACACCCTTATTACCTTCCTCTTACAGGCCTACCTACCTTTACTTCATCTTTAATGTTCTAATCATTGCACTTGGAGCTGAAGCCGGTCGTATCTCAGCTTTTTCTAAGCCTTTGGAAGACAAACAGCAACATGTTTCTGAGGAAAAGGAAGCACTTAACGTAACCAGTGGAAGTGATGAAAAGAAGCCTAAGATTGCTGAAAAGTCTGCTTGTGATGAGAAGACTGTTGGTGTCACAGAAGTAGATAAGGTGAAAAAGTGTTCTTCAATGCCAAACCTTTTGTTTATAGGAAGCGGAGAAAGGGAAGGAGAAGTGATGGATGAGGAGATTGAAGCAGAAGATGAGATTGGGGGAGTTATAAATAATGAGCAAGAGCTGTTTGCAAAAGCTGAGGCCTTCATTGGGAACTTCTACAAACAGTTAAAGATGCAGAGAGAGGAGTCTTGGGTTTATTAG 519 0.4085 MNKFNKSEVLVLIVLGLLLGITPLLPSSYRPTYLYFIFNVLIIALGAEAGRISAFSKPLEDKQQHVSEEKEALNVTSGSDEKKPKIAEKSACDEKTVGVTEVDKVKKCSSMPNLLFIGSGEREGEVMDEEIEAEDEIGGVINNEQELFAKAEAFIGNFYKQLKMQREESWVY 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01953 172 MobiDBLite consensus disorder prediction 66 87 - -
Cca05g01953 172 Pfam Cotton fibre expressed protein 145 170 IPR008480 -
Cca05g01953 172 PANTHER OS01G0532300 PROTEIN 1 170 - -
Cca05g01953 172 PANTHER OS01G0532300 PROTEIN 1 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01953 Cca-Chr5 39350883 39351401 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01953 - - mtr:MTR_5g093440 173.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01118 09 32247859 32248863 Cca05g01953 05 39350883 39351401 PCT