Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01943 ATGGTTAACAGAGGGTTGATCTCTATTAGTATTCTCTATGCTCTCATCTTTAGCTTTGGTTCCTCAAAGGCTCAGATGGTTCCAGCTGTTTACGTGTTTGGAGACTCACTTGTTGATGTTGGAAACAACAACTACTTGCCACTTTCCGTTGCAAAGGCAAATCATCGTCACTATGGCATTGATTTTCCTACCCACAAACCAACTGGAAGATTTAGCAACGGCAAGAATGCTGCAGATCTTGTTGCTGAAAAATTGGGTTTGGCAACTTCACCACCTTACCTCTCCCTAAAATCAAAGACCAACAAAAATAATGCATCCTTCATGGATGGTGTCAGTTTTGCCTCTTCAGGTGCTGGAATATTTGATGGTAGAGATGAACGTTATGGACAATCAATACCGTTGACAAAACAAGTGGACTACTATTCAATTGTACACGAAGAAATGATACGAGAAGTAGGAGCTGCTGATCTTCAGAATCATCTTTCAAAATCAATTTTCGTTTTGGTGATTGGCAGCAATGATCTCTTTGGGTACTTTGAGTCATCGGATCTTCGCAAGAAAAACACCCCACAGCAGTATGTGGATTCCATGGCTTTCTCACTAAAAGTGCAACTACAGCGATTATACGACCAGGGGGCCCGTAAATTTGAGATTGCAGGAGTTGGGACACTTGGATGCGTCCCTGTTTACAGGCTAAAGAACAAAACGGAATGCGTTGAAGAAGTGAATTACTGGTCGAAAAAATATAATGAAGGGCTTCGATCCATGTTGAAGGAATGGCAATCGGAGAATGGAAGCATAATCTACTCCTACTTTGACACTTATGCTGCAATCAACGACATCATTCAGAGTCCACCTTCCTATGGATTTACTGAGGTGAAAGGTGCTTGTTGTGGAGTAGGCGAGCTGAATGCTAGGGCTACCTGCCTGCCATTGTCAAACCTTTGTCCTAATAGACAAGATCACCTCTTCTTTGACCAATTCCATCCTACGGAGGCAGCTTCTCGAATACTTGTTGATAGACTTTTCAATGGCTCTTCAAGTTACACATCTCCCATTAACATGAGACAGCTGATACATGCCTAA 1086 0.4227 MVNRGLISISILYALIFSFGSSKAQMVPAVYVFGDSLVDVGNNNYLPLSVAKANHRHYGIDFPTHKPTGRFSNGKNAADLVAEKLGLATSPPYLSLKSKTNKNNASFMDGVSFASSGAGIFDGRDERYGQSIPLTKQVDYYSIVHEEMIREVGAADLQNHLSKSIFVLVIGSNDLFGYFESSDLRKKNTPQQYVDSMAFSLKVQLQRLYDQGARKFEIAGVGTLGCVPVYRLKNKTECVEEVNYWSKKYNEGLRSMLKEWQSENGSIIYSYFDTYAAINDIIQSPPSYGFTEVKGACCGVGELNARATCLPLSNLCPNRQDHLFFDQFHPTEAASRILVDRLFNGSSSYTSPINMRQLIHA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01943 361 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 10 359 - -
Cca05g01943 361 Gene3D SGNH hydrolase 19 348 IPR036514 -
Cca05g01943 361 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 10 359 - -
Cca05g01943 361 SUPERFAMILY SGNH hydrolase 30 343 - -
Cca05g01943 361 Pfam GDSL-like Lipase/Acylhydrolase 30 341 IPR001087 GO:0016788
Cca05g01943 361 CDD SGNH_plant_lipase_like 28 346 IPR035669 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01943 Cca-Chr5 39240342 39243691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01943 27 361 Acyl Lipid Metabolism Gene Families AT4G10950 34.111 3.95e-63 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01943 - - gmx:100777307 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01943 05 39240342 39243691 Cca05g01943 05 39240342 39243691 ECH
Cca09g01103 09 32072454 32078819 Cca05g01943 05 39240342 39243691 PCT