Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01656 ATGGAGGCGATTCAATCCTGGGTTTCAAAGCACAAGCTAGTAACAATTGGGGGACTGTGGGCCTCTGGAATTGGGGCATCCCTTGTGGCCTATTCACGTACAACCTCTCCAATCAAGCCTAGTCTTAGGCTTATTCATGCAAGGTTGCATGCCCAAGCCTTGACACTGGCAGTCTTGTCTGCTGCCGCGGCTTATCAGTACCACGAGAATCGGGCTGCTCAGCCCAAACCGAAGGCCCAGAGTCCTGCTCCGAGTGTGGCCCACCTTCTTGAAAGGGAGCTCCTAAGTCCTTTCTAA 297 0.532 MEAIQSWVSKHKLVTIGGLWASGIGASLVAYSRTTSPIKPSLRLIHARLHAQALTLAVLSAAAAYQYHENRAAQPKPKAQSPAPSVAHLLERELLSPF 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01656 98 Pfam Hypoxia induced protein conserved region 11 61 IPR007667 -
Cca05g01656 98 PANTHER RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL 4 79 IPR040153 -
Cca05g01656 98 ProSiteProfiles HIG1 domain profile. 1 77 IPR007667 -
Cca05g01656 98 PANTHER RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL 4 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01656 Cca-Chr5 35943807 35944683 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01656 - - gmx:100500345 127.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01656 05 35943807 35944683 Cca05g01656 05 35943807 35944683 ECH
Cca01g00235 01 2446549 2447386 Cca05g01656 05 35943807 35944683 PCT