Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00235 ATGGAGGCAGTTCAGTCATGGGTTTCAAAGAACAAGCTCACCAGCATTGGGGCACTCTGGGCATCTGGAATCGGAACATCACTCGTGGCTTATTCATGCAAAAAGTCTCCAATGAAGCCAAGTCTGAGGCTTATCCATGCTAGAATGCATGCTCAGGCGCTAACTTTAGCAGTGCTGTCTGGTGCAGCTGCTTATCATTATTATGAGAAACGTTCTGTTGAGCCAAAACCAGTGGCGGATAATATTCCTGCTCCCAGTCCCAATGTCACCCAGATGCTTGAATATGAACTCCACACTCCTTTCTAA 306 0.4673 MEAVQSWVSKNKLTSIGALWASGIGTSLVAYSCKKSPMKPSLRLIHARMHAQALTLAVLSGAAAYHYYEKRSVEPKPVADNIPAPSPNVTQMLEYELHTPF 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00235 101 PANTHER RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL 4 77 IPR040153 -
Cca01g00235 101 Pfam Hypoxia induced protein conserved region 10 61 IPR007667 -
Cca01g00235 101 ProSiteProfiles HIG1 domain profile. 1 77 IPR007667 -
Cca01g00235 101 Gene3D - 13 72 - -
Cca01g00235 101 PANTHER RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL 4 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00235 Cca-Chr1 2446549 2447386 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00235 - - gmx:100500345 172.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00235 01 2446549 2447386 Cca05g01656 05 35943807 35944683 PCT