Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01650 ATGGGAGATCATTTGGCCAGGGCAGAGGATTTCCAGAACAAGGCAGAGAAGAAGCTCAGCGGTTGGGGCCTCTTCGGCTCCAAATTCGAGGACGCTTCTGAACTCTTCGACAAATCCGCCAATTCCTTCAAGCTCGCTAAATCATGGGACAAAGCAGGATCCACCTACATCAAATTGGCCAATTGCCATTTGAAGTTGGAAAGCAAGCACGAAGCTGCCCAAGCTTATGTTGACGCCGCGCATTGCTATAAAAAAACTAATATAAATGAGGCTGTGTCTTGCTTAGACAATGCTGTAAATATTTTCTGTGAAATTGGGAGGCTATCTATGGCTGCTAGATATTTGAAGGAAATTGCTGAGTTGTATGAGTCTGAACAGAATATTGAGCAGGCTGTTGTTTACTATGAAAAATCAGCTGATTTTTATGAAAATGAAGAAGTGAACACTTCTGCAAACCAGTGCAAACAAAAAGTTGCTCAATTCTCTGCCCAGCTTGAACAATATCAGAGGTCAATTGAGATTTATGAAGAGATTGCTCGCCAGTCTCTCAGCAATAATTTGCTGAAGTATGGAGTTAAAGGACATCTTCTAAATGCTGGCATTTGCCAACTCTGTAAAGGCGATGTCATTGCTATTACCAATGCGTTAGAGCGATATCAGGATTTGGATCCAACATTTTCAGGAACTCGTGAATATAGACTTCTAGCAGATATTGCTGCTGCAATCGATGAAGAAGATATCGGAAAGTTTACTGAAGTTGTCAAGGAATTTGATAGCATGACCCCTCTGGATTCTTGGAAGACAACACTTCTTTTGAGGGTGAAGGAAAAACTGAAAGCCAAAGAACTTGAGGAGGATGATCTTACTTGA 870 0.4149 MGDHLARAEDFQNKAEKKLSGWGLFGSKFEDASELFDKSANSFKLAKSWDKAGSTYIKLANCHLKLESKHEAAQAYVDAAHCYKKTNINEAVSCLDNAVNIFCEIGRLSMAARYLKEIAELYESEQNIEQAVVYYEKSADFYENEEVNTSANQCKQKVAQFSAQLEQYQRSIEIYEEIARQSLSNNLLKYGVKGHLLNAGICQLCKGDVIAITNALERYQDLDPTFSGTREYRLLADIAAAIDEEDIGKFTEVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01650 289 CDD SNAP 7 278 IPR000744 GO:0006886
Cca05g01650 289 Coils Coil 151 178 - -
Cca05g01650 289 Pfam Soluble NSF attachment protein, SNAP 7 278 - -
Cca05g01650 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Cca05g01650 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Cca05g01650 289 PRINTS NSF attachment protein signature 119 136 IPR000744 GO:0006886
Cca05g01650 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Cca05g01650 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Cca05g01650 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Cca05g01650 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Cca05g01650 289 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 289 - -
Cca05g01650 289 Gene3D Tetratricopeptide repeat domain 6 288 IPR011990 GO:0005515
Cca05g01650 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 289 IPR000744 GO:0006886
Cca05g01650 289 SUPERFAMILY TPR-like 7 280 IPR011990 GO:0005515
Cca05g01650 289 SMART tpr_5 112 145 IPR019734 GO:0005515
Cca05g01650 289 SMART tpr_5 53 86 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01650 Cca-Chr5 35890914 35893928 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01650 K15296 - gmx:100794564 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01650 05 35890914 35893928 Cca05g01650 05 35890914 35893928 ECH
Cca01g00241 01 2508353 2513272 Cca05g01650 05 35890914 35893928 PCT