Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00241 ATGGCCGATCAGTTATCCAAGGGAGAGGAATTCTTGAAGAAAGCCGAGAAGAAGCTCAGCGGCTGGGGCTTGTTTGGCTCTAAATACGAAGATGCCGCCGATCTCTTCGATAAAGCCGCCAATTCCTTCAAGCTCGCCAAAACATGGGACAAAGCAGGATCGACATACCTAAAGTTGGCGAGTTGTCATCTGAAGTTGGAAAGCAAGCACGAAGCTGCACAGGCCTATGTTGATGCTGCACACTGCTACAAGAAGACGAATATAAACGAGGCGGTATCTTGCTTGGACAATGCTGTTAATCTTTTCTGTGACATCGGAAGACTCTCTATGGCTGCTAGATATTTAAAGGAAATTGCAGAATTGTACGAGTCTGAACAGAATATTGAGCAGGCTCTTGTGTACTTTGAAAAATCAGCTGATTTTTTTCAAAATGAAGAAGTGACAACTTCTGCAAACCAATGCAAACAAAAAGTCGCCCAGTTTGCTGCTCAGCTAGAACAATATCAGAAATCAATTGATATTTATGAAGAGATAGCTCGCCAATCCCTCAACAATAATTTGCTGAAGTACGGAGTTAAAGGACACCTGCTTAATGCTGGCATCTGCCAACTCTGTAAAGGGGACGTTATTGCTATAACAAATGCATTAGAACGATATCAGGAATTAGATCCAACATTTTCGGGAACACGTGAATATAGATTGTTGGCGGATATTGCTGCTGCAATTGATGAAGAAGATGTTGTGAAGTTTACTGATGTTGTCAAGGAATTTGATAGCATGACTCCTCTGGATTCTTGGAAGACCACACTTCTTTTGAGGGTGAAGGAAAAGCTGAAAGCTAAAGAACTTGAGGAGGATGATCTTACTTGA 870 0.4195 MADQLSKGEEFLKKAEKKLSGWGLFGSKYEDAADLFDKAANSFKLAKTWDKAGSTYLKLASCHLKLESKHEAAQAYVDAAHCYKKTNINEAVSCLDNAVNLFCDIGRLSMAARYLKEIAELYESEQNIEQALVYFEKSADFFQNEEVTTSANQCKQKVAQFAAQLEQYQKSIDIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVIAITNALERYQELDPTFSGTREYRLLADIAAAIDEEDVVKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00241 289 CDD SNAP 7 278 IPR000744 GO:0006886
Cca01g00241 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Cca01g00241 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Cca01g00241 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Cca01g00241 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Cca01g00241 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Cca01g00241 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Cca01g00241 289 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 289 - -
Cca01g00241 289 Pfam Soluble NSF attachment protein, SNAP 7 278 - -
Cca01g00241 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 289 IPR000744 GO:0006886
Cca01g00241 289 Gene3D Tetratricopeptide repeat domain 5 288 IPR011990 GO:0005515
Cca01g00241 289 Coils Coil 151 185 - -
Cca01g00241 289 SUPERFAMILY TPR-like 6 280 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00241 Cca-Chr1 2508353 2513272 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00241 K15296 - gmx:100814639 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00241 01 2508353 2513272 Cca05g01650 05 35890914 35893928 PCT