Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01620 ATGACAGAACCGTCTCCTCCGAACCCTAACATTCGCAGTCAACAACACTCCCTCAGCAGcgatgaggaaccccgcgatgatgacgacattgaagatgacaacgacgacgacgacgacgtcgttcaggaatcgaatCGCGGAATTCCCCAATCCGCAGAGTCCAAGTTGCGGGAGCAGCGTTTCAAGGTGGAAACCCTATCGCGACGGTTGTCGTCGGAGCTGGTTCCTATCCGCGTCCACGACGTGGTTGTAAGCGGCAACACGAAGACAAAGGATTGGGTGATTGAAGCTGAGCTCAAAGGCATCGAGGACGCCACCACCATGCAGGAGCTTATGCAAGCTTCGCAAATCGCCATTGCCAGGCTTCAAGCGCTCGAAATCTTCGATTCCTGCAATGTTCGCCTCGAGGCAGGACCACCAGAACTCCCTAACACCGCCAATGTCATCGTCCACGTTGTCGAATCCGATAACAAAGTTTCCGGCGAATGCGGCGTTTATACCAAGCCCTCGACTAGTTCTTGGACTGCTGAAGGTACTCTTAAGTATAAGAACTTGCTGGGATATGGTGATCTATGGGATGCTTCGTTGGCCTATGGTGCCAACCAAGCGACCGAGGTGAGTGTAGGGGTGTATGCCCCTCGCGTTAAAGGATTGTTAACTCCTATTGTGGCACGAATATCAATGCTTTCGCAAGATTGGCAAGAGTCATCCTCTTACAAGGAACGGTTGCTGGGCGCGTCTCTTGACTTGATCTCGACAAAGCACCATGACTTAGCATACACTCTTGGATGGCGTACCTTAACGGATCCATCACAGATGTCATCCAGGTCAATAAGGAGGCAGCTTGGGCATGGTTTAGTGTCTTCTTTGAAGTATACGTATAAAATTGATAGGAGAAATTCTCCTATTAGGCCAACAAAAGGATATGCTTTTCTTTCCACCACCCACATTGGTGGCCTTACACCGGATCACAGGAGCTTGCGGTTTCTGCGTCAGGAGTTTGATGTTCGCTTTGCGGTCCCTTTTGGGTTTTACAATGCAGCGCTAAACCTTGGGGTATCTGCTGGTGCTGTTTTTCCATGGGGGCTTGGGTTCAAAACCAAGCCATCTCCCCTTCCAGAAAGGTTTTATTTGGGTGGTGATTTTTCTCCAGTTTGCACCATTGGAGGACCAACGACATTATGGGGATTTAAAACTAGAGGACTAGGTCCTACTGAACCACGGAGGCAAAATAGGGATGGGTTTAATGATAACAATGTTGATTCCTCTGGATGGGACTTCATTGGTGGAGATCTTGCTGTTACTGCTTTTGCAGATCTCTCTTTTGATCTTCCAATTAGGTGGTTCACAGAACATGGAATTCATGGGCATGTTTTTGCTGGTTCTGGGAATGCTGCTAAATTAACTCAGAATGAATATAGGCACTTCTCTCCTCGGAAGTTCTTAGAATCCTTTCGAATGTCAGTGGGATGTGGAATTGTCATTCCTACTAGACTGTTCCGCCTAGAGGGTAATTACTTCTACATACTAAGAAAGGATGAACATGATCGTGGGAAGACTGGATTTAGGTTTAGCTTCTCAGCTCCTTCGTAG 1593 0.4557 MTEPSPPNPNIRSQQHSLSSDEEPRDDDDIEDDNDDDDDVVQESNRGIPQSAESKLREQRFKVETLSRRLSSELVPIRVHDVVVSGNTKTKDWVIEAELKGIEDATTMQELMQASQIAIARLQALEIFDSCNVRLEAGPPELPNTANVIVHVVESDNKVSGECGVYTKPSTSSWTAEGTLKYKNLLGYGDLWDASLAYGANQATEVSVGVYAPRVKGLLTPIVARISMLSQDWQESSSYKERLLGASLDLISTKHHDLAYTLGWRTLTDPSQMSSRSIRRQLGHGLVSSLKYTYKIDRRNSPIRPTKGYAFLSTTHIGGLTPDHRSLRFLRQEFDVRFAVPFGFYNAALNLGVSAGAVFPWGLGFKTKPSPLPERFYLGGDFSPVCTIGGPTTLWGFKTRGLGPTEPRRQNRDGFNDNNVDSSGWDFIGGDLAVTAFADLSFDLPIRWFTEHGIHGHVFAGSGNAAKLTQNEYRHFSPRKFLESFRMSVGCGIVIPTRLFRLEGNYFYILRKDEHDRGKTGFRFSFSAPS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01620 530 MobiDBLite consensus disorder prediction 1 56 - -
Cca05g01620 530 MobiDBLite consensus disorder prediction 24 40 - -
Cca05g01620 530 Pfam Omp85 superfamily domain 184 527 IPR000184 GO:0019867
Cca05g01620 530 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 6 528 IPR039910 -
Cca05g01620 530 Pfam Surface antigen variable number repeat 77 154 IPR010827 GO:0019867
Cca05g01620 530 Gene3D membrane protein fhac 76 155 - -
Cca05g01620 530 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 6 528 - -
Cca05g01620 530 MobiDBLite consensus disorder prediction 1 17 - -
Cca05g01620 530 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 169 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01620 Cca-Chr5 35618123 35624961 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01620 K07277 - gmx:100802876 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01620 05 35618123 35624961 Cca05g01620 05 35618123 35624961 ECH
Cca01g00272 01 2862314 2866949 Cca05g01620 05 35618123 35624961 PCT