Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00272 ATGGAAAACTCAGATGAAAAAAACGAAAAACTTCCCTTCTCTCCAAACCCTAACAATGCcgaagaagaagacgagatcgacgaagacgaagacgaagaggaagacgacgacgacgacgTATCGCAGGACCCTGGCGAGCAATCCCCATTGTCGCGGTTGCGCGAGGAGCGTTCGAAGCTGCAAACCCTGTCGCGGCGCTTGGCGTCGGAGCTGGTTCCTATCCGAGTCCACGACGTGCTGATTCGCGGCAACACGAAGACCAAGGATTGGGTGATTGAGGCGGAGCTCAAGCCCCTCGAGGACGCCGCCACCGTGCAGGACCTAATTCGCGCCTCCGAAATCGCCGTCGCCAGGCTCCGGAGCCTCGGGATTTTCGATTCCACCGAGCTCCGGCTCGAGGCCGGACCGCCGGAGCTGCCTCACACCACCAATGTCGTCGTCGAAGTCGTCGAGACCGCCGACAAAATCTCCGGCGATTTCGGCGTTTACACCAAACCCGCGACTAATTCTTGGACTGCTGAAGGTGCTCTCAAGTACAAAAACTTATTAGGTTATGGTGATCTATGGGATGCCTCTTTGGCCTATGGTGCCAACCAAGCAACAGAGGTGAGTGTTGGGCTGTATGCCCCTCGACTGAAAGGATTGTTAACCCCTCTTGTAGCACGACTATCAATGCTTTCCCAAGATTGGCAAGAGTTTTCTTCATACAAAGAGCAGTTGTTAGGCTTGTCTCTTGGCTTAATCTCGGCAAGGCACCATGACTTAGTCTACACTCTTGGATGGCGTACCTTGACTGATCCATCCCGAATGTCATCCAGGTCTATAAGGAGGCAGCTTGGGCATGGTTTACTATCATCTTTGAAGTATACATTTAAAATTGACAGGAGAAACTCACCAATTAGGCCTACAAAAGGATATGCTTTTCTTTCTGCCACTCACTTAGGTGGCCTTACACCAGATCATCGGAGCTTGCGATTTCTGCGTCAGGAATTTGATGTGCGCTGTGCCATCCCCTTTGGGTTTTATAATACAGCACTTAACCTTGGGATTTCTGCTGGTGCTGTTTTTCCATGGGGGCATGGTTTCATGAACAAGCCATCCCCGCTTCCTGAAAGGTTTTATTTGGGCGGTGATTTCTCTCCGGTTTGCGCCCTAGGAGGGCCAATAACATTGTGGGGATTTAAAACTAGGGGATTAGGTCCTACCGAACCACGAAGACGAAGCAGAGATGGAATTATTGATGACGATGATGATTCCTCTAGATGGGACTCCATTGGAGGAGATCTTGCTGTTACTGCTTTTGCAGACCTGTCTTTTGATTTTCCAGTTAGGTGGTTGAGAGATCATGGAATCCATGGTCATGTTTTTGCTGGTGCTGGGAATACTGCTAAATTAACTCAGAATGAATATAAACGCTTTTCACCTCGGAGGTTCTTAGAATCCTTTCGAACATCAGTGGGATGTGGATTTGTTGTTCCTACTAGACTTTTTCGCCTAGAGGGTAACTTCTACTACATACTCAGGAAGGATGAACACGATCGTGGGAAAACTGGATTTAGGTTCAGCTTCTCAGCTCCTTCTTAG 1584 0.4729 MENSDEKNEKLPFSPNPNNAEEEDEIDEDEDEEEDDDDDVSQDPGEQSPLSRLREERSKLQTLSRRLASELVPIRVHDVLIRGNTKTKDWVIEAELKPLEDAATVQDLIRASEIAVARLRSLGIFDSTELRLEAGPPELPHTTNVVVEVVETADKISGDFGVYTKPATNSWTAEGALKYKNLLGYGDLWDASLAYGANQATEVSVGLYAPRLKGLLTPLVARLSMLSQDWQEFSSYKEQLLGLSLGLISARHHDLVYTLGWRTLTDPSRMSSRSIRRQLGHGLLSSLKYTFKIDRRNSPIRPTKGYAFLSATHLGGLTPDHRSLRFLRQEFDVRCAIPFGFYNTALNLGISAGAVFPWGHGFMNKPSPLPERFYLGGDFSPVCALGGPITLWGFKTRGLGPTEPRRRSRDGIIDDDDDSSRWDSIGGDLAVTAFADLSFDFPVRWLRDHGIHGHVFAGAGNTAKLTQNEYKRFSPRRFLESFRTSVGCGFVVPTRLFRLEGNFYYILRKDEHDRGKTGFRFSFSAPS 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00272 527 Coils Coil 19 39 - -
Cca01g00272 527 Gene3D membrane protein fhac 73 152 - -
Cca01g00272 527 MobiDBLite consensus disorder prediction 1 57 - -
Cca01g00272 527 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 167 525 - -
Cca01g00272 527 Pfam Omp85 superfamily domain 181 524 IPR000184 GO:0019867
Cca01g00272 527 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 18 525 - -
Cca01g00272 527 MobiDBLite consensus disorder prediction 20 43 - -
Cca01g00272 527 Coils Coil 50 70 - -
Cca01g00272 527 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 18 525 IPR039910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00272 Cca-Chr1 2862314 2866949 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00272 K07277 - gmx:100785408 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00272 01 2862314 2866949 Cca05g01620 05 35618123 35624961 PCT