Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01605 ATGAATGTCAATAGCCCACAAGATTGGCCTGAGCCAATTGTTCGGGTTCAGTCCTTGTCCCAAACCTGCATAGATTCAATCCCCGAGAGGTATATCAAGCCCCCTAGTGACCGTCCATCTCCTCAACTTCATGCTGATGATGCCAATATCCCAGTTATTGACCTTTCGGGTCTTTATGGTGACCCTGATGCACGAGCCTCCACTCTCACCCAAATCTCTCAGGCTTGTAATGACTGGGGTTTCTTCCAAATAGTCAACCATGGTGTTAGCCACGACTTGATGGACATGGCTAGGGAAACTTGGCGCCAGTTTTTTCACTTGCCTTCGGAGCTCAAACAGCAATATGCAAACTCCCCAAAAACTTATGAGGGCTATGGTAGCAGGCTTGGAGTTGAGAAAGGTGCCATTCTTGATTGGAGTGATTACTATTTTCTTCATTACCTTCCCTTGCCATTGAAGAACTACAGCAAATGGCCCACTCACCCTCCCTCTTGCAGGGAAGTGTGTGATGAGTATGGGAGAGAGGGGGTGAAGTTATGTGGGAGGTTGATGAAGGTTCTGTCCATAAACCTTGGATTGGAAGAGGATTTTCTTCAGAAATCATTTGGAGGAGAAGATATTGGAGCGTGCCTGAGGGTGAATTTTTACCCTAAGTGTCCACGGCCAGAGTTGACGTTGGGTTTGTCATCGCACTCAGATCCAGGTGGCATGACACTCTTACTTTCAGATGACCAAGTCCCTGGTCTTCAAGTCCGCAAAGGTGACAATTGGATCACCGTGAAGCCTCTTCCCCATGCCTTTATTGTCAATATTGGAGACCAAATTCAGGTTGTAAGCAATGCAAACTACAAGAGTGTGGAGCACAGGGTGGTAGTGAATTCAAATAAAGAGAGAGTTTCCCTAGCCTTCTTCTACAATCCCAAAAGTAACATACCCATTGGGCCAGCAAAGGAGCTGGTAAAGCCAGACAAACCTCCACTCTACACGGCCATGACCTTCGATGAATACAGGCTCTTCATAAGATTGAGAGGACCATGTGGAAAATCTCACGTCGAATCTTTAAAATCTCCAAGATGA 1077 0.4643 MNVNSPQDWPEPIVRVQSLSQTCIDSIPERYIKPPSDRPSPQLHADDANIPVIDLSGLYGDPDARASTLTQISQACNDWGFFQIVNHGVSHDLMDMARETWRQFFHLPSELKQQYANSPKTYEGYGSRLGVEKGAILDWSDYYFLHYLPLPLKNYSKWPTHPPSCREVCDEYGREGVKLCGRLMKVLSINLGLEEDFLQKSFGGEDIGACLRVNFYPKCPRPELTLGLSSHSDPGGMTLLLSDDQVPGLQVRKGDNWITVKPLPHAFIVNIGDQIQVVSNANYKSVEHRVVVNSNKERVSLAFFYNPKSNIPIGPAKELVKPDKPPLYTAMTFDEYRLFIRLRGPCGKSHVESLKSPR 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01605 358 SUPERFAMILY Clavaminate synthase-like 13 340 - -
Cca05g01605 358 Pfam non-haem dioxygenase in morphine synthesis N-terminal 50 160 IPR026992 -
Cca05g01605 358 Pfam 2OG-Fe(II) oxygenase superfamily 209 307 IPR044861 -
Cca05g01605 358 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 10 355 - -
Cca05g01605 358 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE PROTEIN 10 355 - -
Cca05g01605 358 Gene3D - 11 340 IPR027443 -
Cca05g01605 358 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 206 307 IPR005123 -
Cca05g01605 358 PRINTS Isopenicillin N synthase signature 72 89 - -
Cca05g01605 358 PRINTS Isopenicillin N synthase signature 267 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01605 Cca-Chr5 35393156 35397094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01605 16 355 Glycosyltransferase AT5G59530 32.113 3.88e-54 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01605 - - gmx:100794125 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01605 05 35393156 35397094 Cca01g01895 01 44303689 44307512 ECH
Cca05g01605 05 35393156 35397094 Cca05g01605 05 35393156 35397094 ECH