Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01895 ATGATGGCATGCCAACAGTGGCCAGAGCCAGTGATTCGAGTCCAAGCCTTGGCCGAGAGTGGCTTAACCACAATCCCCGACCGTTTCATAAAGCCTAAGTCCCAAAGAGTCACTAATAATAACACTTCTCATGCTTCAAATCCAAACCTAGCCAATTTTCATACTCATGATCATGACAACATTAACATCCCCGTGATTGACATGAAATACATCTATGGCGGCGGTGGTGAGGGGTGGAGGGAGGAGGCGCTCCGCTCCGTGGCGGAGGCTTGTAAGGAGTGGGGTTTCTTTCAAGTTGTGAACCATGGTGTGAGCCATGAGTTGATGAAGAGTGCTAGAGAGGTGTGGCGTGAGTTCTTTCACCAACCACTTGAGGTGAAAGAGGAGTATGCAAATTCACCGCTCACTTATGAAGGGTATGGAAGTAGGTTGGGAGTGAAAAAAGGGGCCATTTTGGATTGGAGTGACTACTTCTTTCTCCATTACATGCCTTGTTCCCTTAGGGACCAAGCCAAGTGGCCGGCCCTCCCAACATCCTTAAGGAAAATCATTGCTGAATATGGTGAGGAGGTTGTTAAGCTAGGAGGAAGGATGCTTGAGATATTGTCAATAAATCTTGGGCTTAGAGAGGATTTCCTCCTAAATGCATTTGGTGGTGAAAAAGATCTTGGTGCTTGCTTAAGGGTGAATTTCTATCCAAAGTGCCCACAACCTGACCTCACTATGGGGCTGTCCTCTCACTCAGACCCTGGTGGCATGACCATTCTTCTCCCTGATGAAAATGTGTCTGGACTCCAAGTACGCAAAGGAGATGATTGGATCACTGTTAAGCCTGTCCCAAATGCTTTCATCATCAACATGGGTGACCAAATTCAGGTGCTGAGCAATGCAATTTACAAGAGTATAGAGCACAGGGTGATTGTGAACTCCAACAAAGATCGAGTTTCATTGGCCTTTTTCTATAATCCCAGAAGCGATATTCTGATTCAACCTGCCGAGGAACTTGTGACTAAGGATAGGCCAGCACTCTACTCACCAATGACCTTTGATGAGTATAGACTTTTCATTAGGACAAAAGGACCTAGTGGAAAAGCTCAAGTTGAATCTTTGGCTTCCAAATGTGATTCCAATTGA 1134 0.4586 MMACQQWPEPVIRVQALAESGLTTIPDRFIKPKSQRVTNNNTSHASNPNLANFHTHDHDNINIPVIDMKYIYGGGGEGWREEALRSVAEACKEWGFFQVVNHGVSHELMKSAREVWREFFHQPLEVKEEYANSPLTYEGYGSRLGVKKGAILDWSDYFFLHYMPCSLRDQAKWPALPTSLRKIIAEYGEEVVKLGGRMLEILSINLGLREDFLLNAFGGEKDLGACLRVNFYPKCPQPDLTMGLSSHSDPGGMTILLPDENVSGLQVRKGDDWITVKPVPNAFIINMGDQIQVLSNAIYKSIEHRVIVNSNKDRVSLAFFYNPRSDILIQPAEELVTKDRPALYSPMTFDEYRLFIRTKGPSGKAQVESLASKCDSN 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01895 377 Gene3D - 9 357 IPR027443 -
Cca01g01895 377 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 3 368 - -
Cca01g01895 377 SUPERFAMILY Clavaminate synthase-like 10 358 - -
Cca01g01895 377 Pfam 2OG-Fe(II) oxygenase superfamily 225 323 IPR044861 -
Cca01g01895 377 Pfam non-haem dioxygenase in morphine synthesis N-terminal 63 174 IPR026992 -
Cca01g01895 377 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 222 323 IPR005123 -
Cca01g01895 377 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE 3 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01895 Cca-Chr1 44303689 44307512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01895 60 370 Glycosyltransferase AT5G59530 32.704 2.01e-49 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01895 - - pvu:PHAVU_010G000300g 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01605 05 35393156 35397094 Cca01g01895 01 44303689 44307512 ECH
Cca01g01895 01 44303689 44307512 Cca01g01895 01 44303689 44307512 ECH