Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01598 ATGAGCAACGTCCATGAGTACAGAATGTTCAAGTACTTCAACAGAAAGTTCGCCGTCTCCGATCAATCCCCTCCGCCGGACGTCAAGGAACTCTTCTCCTCCTTCGCCGACGGAGCCCCCGCCATGTCCGCCGACCAGCTCCTCCGCTTCCTCCACGACCACCAACTCGAACCCCACTACACCGCTGAGGATTCCGCCCGCATCCTCCAAAACGTCTTGCAATCGCGCCAACAAAACGACGACGCAGAATGCGACCCCCCAGACGGACTCACCCTCGACGAGTTCTTCCGCTTCTTGTTCCTCGTCGATTACAACGATCCTCTCAAATCACAGGTACATCATGATATGAATGCTCCGTTATCACATTATTTCATATATACCGGGCACAATTCCTATCTGACTGGGAATCAGCTGAGCAGCGATTGCAGTGATGTGCCAATCATAAAGTCTTTGCAACGAGGTGTTCGAGTAATTGAACTTGATTTATGGCCAAATTCAACTAAAGATGATATCGACGTAGTTCATGGAAGGACACTTACTGCTCCTGTCTCACTTATCCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTGAATACCCAGTCATTATAACCTTAGAAGACCACCTTACACCATTTCTTCAAGCTAAAGCTGCAGAGATGATAACTCAAATATTTGGAGATATGCTCTATTATCCTCAGACAGATCTTGTGACAGAATTCCCCACACCAGAATCTGTGAAAGGTCGAATTCTTATATCAACCAAACCACCAAAAGAATATCTTGAATCCAAGCAATTCAAGGATAGTGACAGTGAAAGGGAATCTGTTGATGAAGGGTCGGCCTCACCATGCATTATCGGTGAAGTGGAAGTTGATGAGAAGCTGAATGGAAGTGATCTTGAAGAGGAAGGCTTGACTACTCGTGATAAAAAACCAGACCAACCTAGTGCATTTGAATACAAGCGTTTGATCACAATCCATGCTGGGAAGCCAAAGGGTCCTGTAAGAGACCACTTAAACATTGCTGGGGATGTAAAACGCTTGAGCTTGAGTGAACAGGAACTTGAAAGGGCCTCTGCCTCATATGGTTCTGATATTGTTAGATTTACTCAGAAGAATATTATCAGGGTATATCCAAGGGGAACACGTGTCACCTCCTCAAATTACAGGCCTCATATAGGGTGGATGTACGGAGCTCAGATGGTTGCATTTAACATGCAGGGGCATGGAAAATCACTCTGGTACATGCAAGGGATGTTTAGAGCAAATGGAGGGTGTGGTTATGTGAAAAAGCCTTTATTTCTAATAGAAGAAGACCCAGAAAATAAGGTTTTTGATCCTAAAAGAACATCGCCGGTGAAGACGACATTAAAGGTTAAAGTATACATGGGGAACGGGTGGAGCACAGATTTTAGCAAAACATACTTTGATGCATTTTCTCCTCCGGACTTTTATACAAAGGTATGCATTGTTGGAGTACCAGCTGATAAAGCCAATAAGAAGACCAAGGTAATTCAAGATGATTGGTTTCCTGTGTGGGACGAAGAGTTTGAATTTCCCTTGACTGTTCCAGAACTAGCCTTGCTTCGAATTGAAGTTCGGGAGTATGATAAGCATGAAAAGGATGACTTTGGCGGGCAAACATGTTTGCCAATCTCTGAGCTAAAATCTGGTTTCCGGGCAATCCCTTTACATGATGAGAAAGGCGAGCAATTAAAATCTGTAAAGCTTTTAATGCGGTTTCAGTTCACATGA 1764 0.4393 MSNVHEYRMFKYFNRKFAVSDQSPPPDVKELFSSFADGAPAMSADQLLRFLHDHQLEPHYTAEDSARILQNVLQSRQQNDDAECDPPDGLTLDEFFRFLFLVDYNDPLKSQVHHDMNAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKSLQRGVRVIELDLWPNSTKDDIDVVHGRTLTAPVSLIQCLKSIKEYAFVKSEYPVIITLEDHLTPFLQAKAAEMITQIFGDMLYYPQTDLVTEFPTPESVKGRILISTKPPKEYLESKQFKDSDSERESVDEGSASPCIIGEVEVDEKLNGSDLEEEGLTTRDKKPDQPSAFEYKRLITIHAGKPKGPVRDHLNIAGDVKRLSLSEQELERASASYGSDIVRFTQKNIIRVYPRGTRVTSSNYRPHIGWMYGAQMVAFNMQGHGKSLWYMQGMFRANGGCGYVKKPLFLIEEDPENKVFDPKRTSPVKTTLKVKVYMGNGWSTDFSKTYFDAFSPPDFYTKVCIVGVPADKANKKTKVIQDDWFPVWDEEFEFPLTVPELALLRIEVREYDKHEKDDFGGQTCLPISELKSGFRAIPLHDEKGEQLKSVKLLMRFQFT 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01598 587 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 5 586 IPR001192 GO:0035556
Cca05g01598 587 Gene3D C2 domain 454 587 IPR035892 -
Cca05g01598 587 ProSiteProfiles C2 domain profile. 439 569 IPR000008 -
Cca05g01598 587 PRINTS Phospholipase C signature 119 137 IPR001192 GO:0035556
Cca05g01598 587 PRINTS Phospholipase C signature 145 165 IPR001192 GO:0035556
Cca05g01598 587 PRINTS Phospholipase C signature 242 259 IPR001192 GO:0035556
Cca05g01598 587 PRINTS Phospholipase C signature 377 398 IPR001192 GO:0035556
Cca05g01598 587 PRINTS Phospholipase C signature 398 416 IPR001192 GO:0035556
Cca05g01598 587 PRINTS Phospholipase C signature 553 563 IPR001192 GO:0035556
Cca05g01598 587 Pfam Phosphatidylinositol-specific phospholipase C, X domain 116 258 IPR000909 -
Cca05g01598 587 SMART plcx_3 114 258 IPR000909 -
Cca05g01598 587 CDD C2_PLC_like 457 587 - -
Cca05g01598 587 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 459 586 IPR035892 -
Cca05g01598 587 SMART C2_3c 459 567 IPR000008 -
Cca05g01598 587 CDD PI-PLCc_plant 113 426 - -
Cca05g01598 587 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 6 5 586 - -
Cca05g01598 587 MobiDBLite consensus disorder prediction 264 284 - -
Cca05g01598 587 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 352 438 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca05g01598 587 SMART plcy_3 323 439 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca05g01598 587 Pfam C2 domain 459 561 IPR000008 -
Cca05g01598 587 SUPERFAMILY EF-hand 10 116 IPR011992 -
Cca05g01598 587 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 114 258 - -
Cca05g01598 587 MobiDBLite consensus disorder prediction 264 280 - -
Cca05g01598 587 Gene3D Phosphatidylinositol (PI) phosphodiesterase 111 451 IPR017946 GO:0006629|GO:0008081
Cca05g01598 587 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 351 435 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca05g01598 587 SUPERFAMILY PLC-like phosphodiesterases 114 440 IPR017946 GO:0006629|GO:0008081
Cca05g01598 587 Gene3D - 23 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01598 Cca-Chr5 35275118 35281352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01598 2 586 Acyl Lipid Metabolism Gene Families AT2G40116 59.411 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01598 K05857 - gmx:100777010 997.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01598 05 35275118 35281352 Cca05g01598 05 35275118 35281352 ECH
Cca01g00296 01 3166244 3177088 Cca05g01598 05 35275118 35281352 PCT