Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00296 ATGGCCACCCACAACTACAAAATCTTCAGCTGCTTCAACAGGAAGTTCACCGTCACCGAGCAGGGCCCGCCGCCCGACGTCGAAAAGGCGTTCTCCGTCTTCACCGGCGGCGCCTCCTCCATGTCCGCCGATCACCTCCTCCGCTTCCTGGAGGAGCACCAGGGCGAAGCGGACTGCACTCTATCGGATTCCGAGGGGATCCTTGAGCAATTGCGGAAAGATCAGGAAAGTGAAATCGATGTCCATGTCTTCTTCCAATTCCTGCTCCACCACAGTTTCAATAGCCCCATCAAATCTCAGGTACATCATGATATGAATGCTCCATTGTCTCATTATTTCATATACACTGGGCACAATTCCTATCTGACTGGGAATCAACTGAGCAGTGACTGCAGTGATCTGCCAATCATAAAGGCTTTGCAACGAGGTGTGCGAGTAATTGAACTAGATTTATGGCCAAATTCAGCCAAAGATGATATCGATGTAGTTCATGGAAGGACTCTTACCACTCCTGTCACACTTATCCGATGTTTTAAGTCCATAAAAGAGTATGCTTTTGTTAAAACTCATTACCCACTGATTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCTAAAGTTGCAGGGATGGCAATTCAAATATTTGGAGAAATGCTTTATTACCCTGAGACAGATTCTCTGACGGAATTCCCCACACCAGAATCATTGAAAGGTCGAATTCTTATATCAACCAAACCACCAAAAGAATTTCTTGAATCCAAACAAAGTGATGACAAGGAATCAGCTGACAAGGGTTCATCATCGCCAGACCAAATTAATGAACCGGAAAATGATGATAAGACTGCACCTGAGTATAAACAGTTGATTACAATTCATGCTGGGAAACCCAAGGGTGACGTACAAGATGAATTAAAAGCTGTCGGTAACGTTAGGCGCTTAAGCTTGAGTGAACAAGCCCTTGAAAAGGTTTCTGAATCTTATGGAGCTGATATTGTTAGGTTTACGCAGAAGAATATTCTCAGAGTGTATCCAAAGGGAACACGTCTCAACTCCTCAAATTACAGGCCACACATAGGGTGGACGTACGGAGCTCAGATGGTTGCATTTAACATGCAGGGGTATGGAAAATCACTCTGGTTCATGCAAGGAATGTTTAGAGCAAATGGAGGGTGTGGTTACGTGAAAAAGCCTGATTTTCTAATTGAACAAGGTCCACAAAATGAGGTTTTTGATCCTAAAATAACATTGCCAGTGAAGAAAACATTAAAGGTAAAAGTCTATATGGGGAACGGTTGGAGCTTAGATTTCAGCCAAACAGACTTTGATACTTACTCACCACCAGACTTTTACGTTAAGGTTTGTACTATTGGGGTTCCTGCTGATATGGCCAAGAAGAAAACAAGTGTAATTTCAAATGATTGGTTTCCCATCTGGGACGAAGAGTTTGATTTCCCTTTGACTGTTCCTGAGCTGACTTTGCTCCGAATAGAAGTTCGAGAGAATGATAGACATCAAAAGGATGACTTTGCTGGACAGACGTGTTTGCCAGTCTCAGAGATAAAGTCTGGATTCCGGTCAGTCCCTCTGTATGATAAAAAGGGTGACAAATTAAAATCTGTGAAGCTTTTATTGCGGTTTCAGTTTAGATAA 1656 0.4293 MATHNYKIFSCFNRKFTVTEQGPPPDVEKAFSVFTGGASSMSADHLLRFLEEHQGEADCTLSDSEGILEQLRKDQESEIDVHVFFQFLLHHSFNSPIKSQVHHDMNAPLSHYFIYTGHNSYLTGNQLSSDCSDLPIIKALQRGVRVIELDLWPNSAKDDIDVVHGRTLTTPVTLIRCFKSIKEYAFVKTHYPLIITLEDHLTPDLQAKVAGMAIQIFGEMLYYPETDSLTEFPTPESLKGRILISTKPPKEFLESKQSDDKESADKGSSSPDQINEPENDDKTAPEYKQLITIHAGKPKGDVQDELKAVGNVRRLSLSEQALEKVSESYGADIVRFTQKNILRVYPKGTRLNSSNYRPHIGWTYGAQMVAFNMQGYGKSLWFMQGMFRANGGCGYVKKPDFLIEQGPQNEVFDPKITLPVKKTLKVKVYMGNGWSLDFSQTDFDTYSPPDFYVKVCTIGVPADMAKKKTSVISNDWFPIWDEEFDFPLTVPELTLLRIEVRENDRHQKDDFAGQTCLPVSEIKSGFRSVPLYDKKGDKLKSVKLLLRFQFR 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00296 551 Pfam Phosphatidylinositol-specific phospholipase C, X domain 105 247 IPR000909 -
Cca01g00296 551 SMART C2_3c 423 531 IPR000008 -
Cca01g00296 551 MobiDBLite consensus disorder prediction 252 267 - -
Cca01g00296 551 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 6 2 550 - -
Cca01g00296 551 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 2 550 IPR001192 GO:0035556
Cca01g00296 551 CDD PI-PLCc_plant 102 390 - -
Cca01g00296 551 PRINTS Phospholipase C signature 108 126 IPR001192 GO:0035556
Cca01g00296 551 PRINTS Phospholipase C signature 134 154 IPR001192 GO:0035556
Cca01g00296 551 PRINTS Phospholipase C signature 231 248 IPR001192 GO:0035556
Cca01g00296 551 PRINTS Phospholipase C signature 341 362 IPR001192 GO:0035556
Cca01g00296 551 PRINTS Phospholipase C signature 362 380 IPR001192 GO:0035556
Cca01g00296 551 PRINTS Phospholipase C signature 517 527 IPR001192 GO:0035556
Cca01g00296 551 Pfam C2 domain 424 525 IPR000008 -
Cca01g00296 551 SUPERFAMILY EF-hand 6 105 IPR011992 -
Cca01g00296 551 ProSiteProfiles C2 domain profile. 404 533 IPR000008 -
Cca01g00296 551 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 423 550 IPR035892 -
Cca01g00296 551 SUPERFAMILY PLC-like phosphodiesterases 103 404 IPR017946 GO:0006629|GO:0008081
Cca01g00296 551 Gene3D C2 domain 416 551 IPR035892 -
Cca01g00296 551 SMART plcy_3 287 403 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca01g00296 551 CDD C2_PLC_like 421 551 - -
Cca01g00296 551 SMART plcx_3 103 247 IPR000909 -
Cca01g00296 551 MobiDBLite consensus disorder prediction 250 282 - -
Cca01g00296 551 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 315 401 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca01g00296 551 Gene3D Phosphatidylinositol (PI) phosphodiesterase 100 415 IPR017946 GO:0006629|GO:0008081
Cca01g00296 551 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 316 402 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca01g00296 551 Gene3D - 22 99 - -
Cca01g00296 551 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 103 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00296 Cca-Chr1 3166244 3177088 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00296 2 550 Acyl Lipid Metabolism Gene Families AT2G40116 59.500 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00296 K05857 - gmx:100786997 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00296 01 3166244 3177088 Cca05g01598 05 35275118 35281352 PCT