Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01597 ATGGGAAATAACATGGCAACCTACAACAAATACAAAAGTTTCTTGTTCATCATCAGAAAGTTCAAGGTCACCGAGCCAGTTCCACCTCAGGACCTCGAGGAGGAGTTTTCAAAGTTCACTGGAGGAGGATCTTACATGTCTGTTGAGCAGCTTCACCGTTTTCTGGTAGAGCACCAGGGTGAAGAGAACCACACCTTATCGGATTCAGACAAAGTTGTTGAGAAGATTTTGCAAAAGAGAAAGACAGGTCAAGAATCTTTTAACTTAGATCAAAAGAGAGAACAGGAAATCACCCTTGATGAGCTCTTCTGTTTTTTGCTTCATGATGACTTTAACGGCCCCTTGAAAACTGAGGTACATCATGATATGGGTGCTCCATTGTCACATTATTTCATATATACAGGCCATAACTCCTATTTGAAAGGGAATCAACTCAGCAGTGACTGCAGTGAAGAGCCAATCATAAAGGCTTTGAAACGAGGTGTGCGTGTCATTGAACTTGATTTATGGCCAACTTACAATAAGGGTGACATTAAAGTAGATCATGGATGGACTCTTACCAACCCTGTCTCAGTTATCAAATGTCTGCAGTCCATCAAGAAATTTAGTTTTGTTGCATCTGAGTACCCAGTGATCATAACCATAGAAGACCATCTTACAAAAGATCTTCGAGCTAAATTTGCAGATATGGCAACTGAAATATTTGGGGAAATGCTTTATTACCCCGAGACAGATTGTTTAACAGAATTCCCTTCACCAGAATCACTGAAAAATCGAGTGATTATATCAACCAAACCCCCGAAAGAATGTTTTGACTCCAACCATATCAAGGAGAGTGACAATTGTCCTATGCTAAATGAAAGTGAATCATCTGATGAAGAATCATGGGGAAAGAGGTCTTCAGACTCTAGTAGGAACGAAGTGGAGACTGAGGGCACGCAGAATGGAAGTGATCGTGATGAGAGAGAAGTAAGTGCATGTGAATGTGGCAACAAATCATATCAGGGGTGTTCACCTGATTACAAACGCATAATTACTATCCATAATACGAAGCTTAAGGGTTGCCTTAAGGATAAATTGAGAACTGACGGTGAACTAAGACGCCTAAGTTGGAGTGAGACGACCCTTGAAAAGGCTTCAGAATCTTATGGAACAGATATTCTTAGGTTCACACAGAAAAATATACTCAGGGTATATCCAAGGGCAATGCGGGTCAAATCCACAAATTTCAAGCCACATATTGGGTGGATGTACGGTGCTCAGATGGTTGCATTCAATATGCAGGGTCATGGCAAATCGCTCTGGTTGATGCAGGGGATGTTCAGGGCAAATGGAGGATGTGGTTATGTCAAAAAGCCTCAAATTCTAATGCAGGAATATCAATGTGACAATGAGTTTGATCCTACAAGGATACAGTCAGTGAAGAAGAAGACATTAAAGGTAAACTTATACATGGGACATGGGTGGAGCCTAGATTTCAGTCCTACACACTTCGACAAGTGCTCTCCGCCAGACTTCTATGCCAAGATCCGTATTGTTGGAATGCCTGGTGATATTGCAAAGAGGAAAACAAAGGTTATCATGGACAACTGGTTTCCTGTTTGGGATGAAGAATTTGAATTCTCATTAAGTGTTCCAGAGCTTGCATTGCTTCTGATACAAGTAAAGGATAAAGATCAGGGAAAGGATGACTTTGCTGGACAAACATGTTTGCCACTGTCAGAGCTAAAACTTGGATTTCGTTCAGTCCCTTTATATAACAGAAAGGGAGAGAAATTTAAGTCTGTAAAGATATTGATGCGGTTTCAGTTTGAATGA 1818 0.4081 MGNNMATYNKYKSFLFIIRKFKVTEPVPPQDLEEEFSKFTGGGSYMSVEQLHRFLVEHQGEENHTLSDSDKVVEKILQKRKTGQESFNLDQKREQEITLDELFCFLLHDDFNGPLKTEVHHDMGAPLSHYFIYTGHNSYLKGNQLSSDCSEEPIIKALKRGVRVIELDLWPTYNKGDIKVDHGWTLTNPVSVIKCLQSIKKFSFVASEYPVIITIEDHLTKDLRAKFADMATEIFGEMLYYPETDCLTEFPSPESLKNRVIISTKPPKECFDSNHIKESDNCPMLNESESSDEESWGKRSSDSSRNEVETEGTQNGSDRDEREVSACECGNKSYQGCSPDYKRIITIHNTKLKGCLKDKLRTDGELRRLSWSETTLEKASESYGTDILRFTQKNILRVYPRAMRVKSTNFKPHIGWMYGAQMVAFNMQGHGKSLWLMQGMFRANGGCGYVKKPQILMQEYQCDNEFDPTRIQSVKKKTLKVNLYMGHGWSLDFSPTHFDKCSPPDFYAKIRIVGMPGDIAKRKTKVIMDNWFPVWDEEFEFSLSVPELALLLIQVKDKDQGKDDFAGQTCLPLSELKLGFRSVPLYNRKGEKFKSVKILMRFQFE 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01597 605 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 370 456 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca05g01597 605 ProSiteProfiles C2 domain profile. 460 587 IPR000008 -
Cca05g01597 605 Pfam C2 domain 499 579 IPR000008 -
Cca05g01597 605 SUPERFAMILY PLC-like phosphodiesterases 121 458 IPR017946 GO:0006629|GO:0008081
Cca05g01597 605 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 368 454 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca05g01597 605 Gene3D C2 domain 471 605 IPR035892 -
Cca05g01597 605 SUPERFAMILY EF-hand 12 123 IPR011992 -
Cca05g01597 605 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 121 265 - -
Cca05g01597 605 MobiDBLite consensus disorder prediction 281 322 - -
Cca05g01597 605 PRINTS Phospholipase C signature 126 144 IPR001192 GO:0035556
Cca05g01597 605 PRINTS Phospholipase C signature 152 172 IPR001192 GO:0035556
Cca05g01597 605 PRINTS Phospholipase C signature 249 266 IPR001192 GO:0035556
Cca05g01597 605 PRINTS Phospholipase C signature 395 416 IPR001192 GO:0035556
Cca05g01597 605 PRINTS Phospholipase C signature 416 434 IPR001192 GO:0035556
Cca05g01597 605 PRINTS Phospholipase C signature 571 581 IPR001192 GO:0035556
Cca05g01597 605 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 478 604 IPR035892 -
Cca05g01597 605 Pfam Phosphatidylinositol-specific phospholipase C, X domain 123 265 IPR000909 -
Cca05g01597 605 SMART C2_3c 478 585 IPR000008 -
Cca05g01597 605 SMART plcx_3 121 265 IPR000909 -
Cca05g01597 605 CDD C2_PLC_like 476 605 - -
Cca05g01597 605 SMART plcy_3 341 457 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca05g01597 605 MobiDBLite consensus disorder prediction 291 322 - -
Cca05g01597 605 Gene3D Phosphatidylinositol (PI) phosphodiesterase 118 470 IPR017946 GO:0006629|GO:0008081
Cca05g01597 605 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 1 605 IPR001192 GO:0035556
Cca05g01597 605 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 1 605 - -
Cca05g01597 605 Gene3D - 27 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01597 Cca-Chr5 35262901 35268594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01597 2 605 Acyl Lipid Metabolism Gene Families AT2G40116 52.083 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01597 K05857 - gmx:100820253 1066.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00297 01 3183837 3187560 Cca05g01597 05 35262901 35268594 PCT