Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00297 atgaaaatggaaacctgcaaaatgaagatgTTAAATTTCTTGGCCAAGAAAGGTGAAGTCAACAAGGCAGAAACACCTTTGGATCTTAAGGAAGCATTTTACGAGTTTGCTAGAGGAGGGAACCACATGAAGAAGGACCAACTTCTTCGGTTCATGGTGGAGCACCAGGGAGAAAACATCAGAACCATTGAGGATTTGGATAAAATAGTTGAAAAGTTTTCACAAGTAGGAAGTTCTAGTTCTAGCCCTAAAACTTGCCCCACAAGAATTGTGGATCTGTATAACAAACAAGGGTTAAGTCTCAATGACTTCATTGATTTTCTGCTACTTCATGATTTCAATGGTCCCTTGAAAGACGAGGTGCATCATGATATGAATGCTCCTTTGTCGCATTATTTCATTTACACCGGACACAATTCCTACCTTACTGGGAATCAACTTACTAGTGAGAGTAGTGATGAGCCAATTATAGAGGCTTTGAAGCAAGGTGTACGAGTAATTGAACTAGATTTATGGCCATCTAAATCTCCAACTAAAGATGGTATTAAAGTGGTTCACGGAAGGACTTTTACCACTCCAGTCGCAGTAACCAAATGTCTAAAATCGATAAAGGAATATGCATTTTACAAATCTGATTATCCAGTAATTCTAACTTTGGAGGACCACTTAACAACAAAACATCAGGATAAATTTGCAGAAATGGCAACTCAAATATTTGGAGAAATGCTTTACTTTCCTCATCATACAAATCAAATGACAGAATTCCCCTCACCCGAATCATTGAAAAAACGCATAATTATATCAACCAAACCACCAAAGGAATATATACACTCTGATAATATCAGCAAACCTGTGCCAAATGGAAGTGAACTGTCTAAAGAAGAATCAAGGGGAAAAGAACTGTCAGATTCTTTGGCTAAATTGAAAATTGAGGGCAGGAATGCTAGTGATGAAGATCACGAAGATACAAATACAAGAGATAACAAACCAAACCAACTAGGTGCACGTCAATACAAACACATGATTACAATCCTTGGTGGGAAAGCAAAAGGTTCTATGATGGAACGACTGAAAGAAGATACTAAAGTTAGACGACTAAGTTTGAGTGAGAAGAAACTTAAAAGTGCTTCTGAGACTTATGGAGCTGAGCTTATTAGGTTCACACAGAAAAATATCCTTAGAGTTTTTCCTAAAGGAGAACGTGTCAAATCCTCAAATTTCAGGCCATACTTAGGGTGGTTGTATGGAGCTCAGATGGTTGCATTCAATATGCAGGGGCATGGCAAATCACTCAGGTTGATGCAGGGGATGTTCAGAGCAAATGGAGGGTGTGGTTATGTTAAAAAACCTAAATTTCTTATCCAAACACCTCCGCATGAAGAGGTGTTTGATCCTAAAAGAAAAATGCCGGTGAAGGAGATATTAAAAGTAAAAGTATACAAAGGAGATGGCTGGAGTTCAGATTTCAGTGCAACACACTTTGATCGATTCTCTCCTCCAGACTTTTACACAAAGGTTTGTATTTTTGGAGTGGCAGCTGATTCTTACAAAATGAGAACAAGTGTAAAGATGGACACTTGGTATCCTGTTTGGGATGAAGAGTTTGAATTCTCATTGAGGGTGCCAGAGCTTGCTTTGCTTCAGATAGAAGTAAAGGACAAAGATAAGGGAAAGGATGACTTTGCAGGACAAACTTGTTTGCCAGTATCAGAGCTAAGGCATGGATTTCGGTCAGTGCCTCTACATGACCGAAAGGGAAAGAAACATAAGTCTGTGAAGCTTCTAATGCGGTTTAAGTTTGAAACTTCAAATAAATTATAG 1821 0.3795 MKMETCKMKMLNFLAKKGEVNKAETPLDLKEAFYEFARGGNHMKKDQLLRFMVEHQGENIRTIEDLDKIVEKFSQVGSSSSSPKTCPTRIVDLYNKQGLSLNDFIDFLLLHDFNGPLKDEVHHDMNAPLSHYFIYTGHNSYLTGNQLTSESSDEPIIEALKQGVRVIELDLWPSKSPTKDGIKVVHGRTFTTPVAVTKCLKSIKEYAFYKSDYPVILTLEDHLTTKHQDKFAEMATQIFGEMLYFPHHTNQMTEFPSPESLKKRIIISTKPPKEYIHSDNISKPVPNGSELSKEESRGKELSDSLAKLKIEGRNASDEDHEDTNTRDNKPNQLGARQYKHMITILGGKAKGSMMERLKEDTKVRRLSLSEKKLKSASETYGAELIRFTQKNILRVFPKGERVKSSNFRPYLGWLYGAQMVAFNMQGHGKSLRLMQGMFRANGGCGYVKKPKFLIQTPPHEEVFDPKRKMPVKEILKVKVYKGDGWSSDFSATHFDRFSPPDFYTKVCIFGVAADSYKMRTSVKMDTWYPVWDEEFEFSLRVPELALLQIEVKDKDKGKDDFAGQTCLPVSELRHGFRSVPLHDRKGKKHKSVKLLMRFKFETSNKL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00297 606 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 3 606 IPR001192 GO:0035556
Cca01g00297 606 SMART plcx_3 123 270 IPR000909 -
Cca01g00297 606 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 367 453 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca01g00297 606 Gene3D C2 domain 469 606 IPR035892 -
Cca01g00297 606 SMART C2_3c 474 581 IPR000008 -
Cca01g00297 606 CDD C2_PLC_like 472 601 - -
Cca01g00297 606 SUPERFAMILY EF-hand 25 125 IPR011992 -
Cca01g00297 606 SMART plcy_3 338 454 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca01g00297 606 ProSiteProfiles C2 domain profile. 457 583 IPR000008 -
Cca01g00297 606 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 360 452 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca01g00297 606 Pfam C2 domain 474 574 IPR000008 -
Cca01g00297 606 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 474 600 IPR035892 -
Cca01g00297 606 PRINTS Phospholipase C signature 128 146 IPR001192 GO:0035556
Cca01g00297 606 PRINTS Phospholipase C signature 154 174 IPR001192 GO:0035556
Cca01g00297 606 PRINTS Phospholipase C signature 254 271 IPR001192 GO:0035556
Cca01g00297 606 PRINTS Phospholipase C signature 392 413 IPR001192 GO:0035556
Cca01g00297 606 PRINTS Phospholipase C signature 413 431 IPR001192 GO:0035556
Cca01g00297 606 PRINTS Phospholipase C signature 567 577 IPR001192 GO:0035556
Cca01g00297 606 Gene3D Phosphatidylinositol (PI) phosphodiesterase 119 467 IPR017946 GO:0006629|GO:0008081
Cca01g00297 606 Gene3D - 24 115 - -
Cca01g00297 606 Coils Coil 291 311 - -
Cca01g00297 606 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 123 270 - -
Cca01g00297 606 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 3 606 - -
Cca01g00297 606 Pfam Phosphatidylinositol-specific phospholipase C, X domain 125 270 IPR000909 -
Cca01g00297 606 MobiDBLite consensus disorder prediction 274 336 - -
Cca01g00297 606 SUPERFAMILY PLC-like phosphodiesterases 123 455 IPR017946 GO:0006629|GO:0008081
Cca01g00297 606 MobiDBLite consensus disorder prediction 290 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00297 Cca-Chr1 3183837 3187560 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00297 9 601 Acyl Lipid Metabolism Gene Families AT2G40116 52.827 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00297 K05857 - gmx:100803435 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00297 01 3183837 3187560 Cca05g01597 05 35262901 35268594 PCT