Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01581 ATGGTTGATCTAGATTGGCAAACAAAGATGGTTCGCTCCAACATACCTCCCAAGTCCCCAAAGCTCTCTCTCCCAGATAACAACATCCCAATCCCCGCTTTGCAATTCCCCCTTCCCCTTCGCCAAAACGACATCACTGCAGCATCCCCCCCGCTCTGCACCGCATACGACAACTACCTCCGCCTCCCTCACCTCAAAGCCCTCTGGGCCTCCAATCACTTCCCCAATTGGTCCAACGAGCCCATCTTAAAGCCCACCCTACACGCCCTCGAAATCACCTTCGGCTTCCTGGCAACCGTTTTATCAGACCCCAGACCCTACGTCAACAAGCGCGAGTGGACCCGTCGCCTCGAGTCCCTCGCCACGGCCCAAATCCAAATCATATCATTCCTATGCGAAGACGAGGAGCAAAACCCCCAGACACGTGGCAAGGCGCCGGTGAGCGACATTAACTCCATAGCCATAACCACGGGGACGCACAACAGATGCTACAGCGAGGAAAGCATGCTCCCTCGCCTCGCCACGTGGCAAAAATCCAAGGACGTAGCCAAGAGGATTCTCGCCACCGTGGACTGCCAGATGACGCGCTGCACCTACACGCTGGGCTTGGGAGAGCCCAATCTCGCCGCCAAACCGATTCTCCGTTACGACGCCGTTTGCACGCCCAGGGAGATTCATCTGCTCCAAGCCATGGACGACGGCGTCGCCAACTACGAGAACAAGACGGTGCGCGCCACGCACCAGATCGCCGAGTGCTGGACGCGCGCCGCCGGGAAGCTTCTGGAGAGGGTGGCGGAGTCGGTGGAGAGGAAAACGCTGGAAAAAGCGGCGTGTGAGTGCGAGGCGGTGGAGCGGATCTGGAAGTTGTTAACGGAGGTGGAGGATTTGCACGTGATGATGGATCCGGAGGATTTTCTGAGGCTGAAGAAGCAGCTAGGGGTGAGGAGCTGGGGCGAAACAGCGGCGTTTTGCTTCCGGTCGAGGGAGCTTGTGGAGGTGGCGAAGGCGGATCTGAGGCAGAAGGTGCCGGAGATTCTGGAGGTGGAGGTGGACCCCAAGGGTGGGCCCGGGATGATGGAGGCTGCGATGAAGGCTTACGCGGACAAGTTGGAGAAAGTTCAGGTGTTGCAGGCCATGCAATCCATTGAGGTGGCGATGAAGAGATTCTTCTACGCCTATAAGCATGTTGTGTCGGTTGTGATGGGGAGTTCCAGTTCCGATGCCGATGGCTTAACTCACATCTTTCTTCATCCCTCTTATTACCCTAGCTTGGATGCTGCTAAGACCTTTCTTGCCTACTATTGCCAAAATAACCATTGttaa 1323 0.5669 MVDLDWQTKMVRSNIPPKSPKLSLPDNNIPIPALQFPLPLRQNDITAASPPLCTAYDNYLRLPHLKALWASNHFPNWSNEPILKPTLHALEITFGFLATVLSDPRPYVNKREWTRRLESLATAQIQIISFLCEDEEQNPQTRGKAPVSDINSIAITTGTHNRCYSEESMLPRLATWQKSKDVAKRILATVDCQMTRCTYTLGLGEPNLAAKPILRYDAVCTPREIHLLQAMDDGVANYENKTVRATHQIAECWTRAAGKLLERVAESVERKTLEKAACECEAVERIWKLLTEVEDLHVMMDPEDFLRLKKQLGVRSWGETAAFCFRSRELVEVAKADLRQKVPEILEVEVDPKGGPGMMEAAMKAYADKLEKVQVLQAMQSIEVAMKRFFYAYKHVVSVVMGSSSSDADGLTHIFLHPSYYPSLDAAKTFLAYYCQNNHC 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01581 440 Pfam Hs1pro-1 N-terminus 1 191 IPR009869 GO:0006952
Cca05g01581 440 Pfam Hs1pro-1 protein C-terminus 194 436 IPR009743 -
Cca05g01581 440 SUPERFAMILY Indolic compounds 2,3-dioxygenase-like 216 431 IPR037217 GO:0019441|GO:0020037|GO:0046872
Cca05g01581 440 Gene3D - 224 330 - -
Cca05g01581 440 PANTHER NEMATODE RESISTANCE HSPRO2-LIKE PROTEIN 1 438 - -
Cca05g01581 440 PANTHER NEMATODE RESISTANCE PROTEIN-LIKE HSPRO1 1 438 IPR038759 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01581 Cca-Chr5 35058712 35060319 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01581 - - gmx:100778560 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01581 05 35058712 35060319 Cca05g01581 05 35058712 35060319 ECH
Cca01g00314 01 3495722 3497768 Cca05g01581 05 35058712 35060319 PCT