Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00314 ATGGTCGATTTACATTGGAAATCAAACATGCCAACTTCCGACATGTCTCCCAAGGCACCAAAACTCTCTCTCTCCTTCCATAACCACAACACAGACATCTTCTCCACTGCACCCTCACTCCGCGCCGCATACGAAAACTATCTCCACCTTCCGGAACTCAGAAACCATTGGAACACGCCACACTTCCCTAACTGGACCAACGAACCAATCGTAAAACCCGCTTTACAAGCTCTCGAAATCACCTTCCGTTTCCTCTCCATCCTTCTGTCCGATCCCAGACCTTACTCCAACCGCAGGGAACGCAACCGCAGGCTAGAGTCCCTCGCCATCCACCAAATCGAAATCATCGCAATGCTGTGCGAGGACGAGGACCACAACTCCGCCACACGTGGCACCGCGCCAACTGCTCATCTCACCAACACCGACAATTGCCAGACCAGAAGCTACAGCCAAGAGAGTCTGCTCCCGCGCCTCGCCACCTGGTACAAATCCAAGGACGCGGCGCAGAGGATCCTTCTCTCCGTCGAATGCCAAATGAGGAGGTGTCACTACACGCTGGGTTTGGGAGAGCCCAACCTCGCCGCCAAACCCAGCCTCTTGTACGACCGCGTCTGCAAGCCTCGCGAGATTCACGCGCTCACTGGCCAGCGCGTGGAGAATCACGAGAACGACGCGGTGCACGCCACGCACCAGATCGCCGAGTGTTGGATCCGCGCCGCCTGTAAGCTTGTGGAAAGGATCGGCGACGCCATCCTTTCCAGAAGGTTCGAGGAGGCCGCGGAGGACCTCCACGCGGTGGAGCGGATCTGGAAGCTTCTATCGGAGGTGGAGGATCTTCACCTGGTCATGGATCCGGACGATTTCTTGCGGCTGAAGAACGAGCTGGCGGTGAGGTCGTCGAGAGGCGAGACGGCGTCGTTCTGCTTCCGGTCGAAGGAGCTCGTGGAGTTAACGAAGCTGTGCAGAGATCTGAGGCATAACGTGCCGGAGATTCTGGAAGTGGAAGTGGATCCGAAGGGAGGACCGAGGATTCAGGAGGCGGCGATGAAGCTGTACGTGGCGGAGAAGAAGAGCGCGTTCGAGAAGATTCACGTGCTTCAGGCGATGCAGGCGATTGAGGCGGCGATGAAGAGGTTCTTCTTTTCGTACAAGCAGGTCTTGGCGGTGGTGATGGGAAGCTCCGAGGCGAACGGGAACCGAGTTGGCTTGAGTTACGACTCGGCTGACTCGTTGACTCAGATTTTTCTGGAACCCACGTATTTTCCAAGCTTGGATGCCGCCAAGACTTTCCTAGGCTACTTTTGGGATAATGCCGATTCCAAGTTGGTTTGA 1332 0.5631 MVDLHWKSNMPTSDMSPKAPKLSLSFHNHNTDIFSTAPSLRAAYENYLHLPELRNHWNTPHFPNWTNEPIVKPALQALEITFRFLSILLSDPRPYSNRRERNRRLESLAIHQIEIIAMLCEDEDHNSATRGTAPTAHLTNTDNCQTRSYSQESLLPRLATWYKSKDAAQRILLSVECQMRRCHYTLGLGEPNLAAKPSLLYDRVCKPREIHALTGQRVENHENDAVHATHQIAECWIRAACKLVERIGDAILSRRFEEAAEDLHAVERIWKLLSEVEDLHLVMDPDDFLRLKNELAVRSSRGETASFCFRSKELVELTKLCRDLRHNVPEILEVEVDPKGGPRIQEAAMKLYVAEKKSAFEKIHVLQAMQAIEAAMKRFFFSYKQVLAVVMGSSEANGNRVGLSYDSADSLTQIFLEPTYFPSLDAAKTFLGYFWDNADSKLV 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00314 443 SUPERFAMILY Indolic compounds 2,3-dioxygenase-like 201 431 IPR037217 GO:0019441|GO:0020037|GO:0046872
Cca01g00314 443 Pfam Hs1pro-1 protein C-terminus 179 437 IPR009743 -
Cca01g00314 443 PANTHER NEMATODE RESISTANCE PROTEIN-LIKE HSPRO1 1 439 IPR038759 -
Cca01g00314 443 Pfam Hs1pro-1 N-terminus 1 176 IPR009869 GO:0006952
Cca01g00314 443 Gene3D - 199 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00314 Cca-Chr1 3495722 3497768 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00314 - - gmx:547603 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00314 01 3495722 3497768 Cca05g01581 05 35058712 35060319 PCT