Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01569 ATGGAGGATCGGGACGCGAGGCGGATGACGACGAGGTTGTCGGATGTGGTGCTGGACTGCGTGATGCCGTACATCCATGACCCGAAGGACCGGGACGCGGTGTCGCAGGTGTGCCACCGGTGGTACGAGCTCGACTCGCTCACGCGGAAGCACGTGACTATCGCGCTCTGCTACACCACCACGCCGGACCGGCTCCGGCGGCGGTTCCCGCACCTGGAGTCGCTGAAGCTCAAGGGGAAGCCCCGGGCAGCGATGTTCAACCTCATACCGGAGGACTGGGGAGGATTCGTGACGCCGTGGGTGAGAGAGATCTCTCGGTACTTCGATTGCTTGAAGTCGCTCCACTTTCGCCGCATGATTGTGACGGATTCCGATCTTCAGCACCTGGCTAGTTCGCGCGGTCATGTGCTTCAGGCTCTTAAGCTCGATAAGTGCTCTGGATTCTCCACCGATGGACTTTACTATATCGGTCGCTTTTGCAGGAATTTAAGAATCTTATTTTTAGAGGAAAGTTCACTAGTGGAGAATGATGGTGACTGGCTCCATGAGCTTGCTTTGAATAATACAGTTCTTGAGACACTGAATTTTTACTTGACGGATATTGCCAATATTAGAATCCAAGACCTTGAACTTATTGCTAGAAATTGCCCCAACTTAGTCTCTGTGAAAATTACTGATTGTGAAATATTGGATCTGGTGAACTTCTTTGGACATGCGTCTGCTCTAGAAGAATTTTGTGGTGGTTCCTACAATGAGGAATTGGAGTACAATGCTATACCATTACCAGAAAAATTAAGTCGTTTGGGTTTGACATATATTACAAAGAATAAAATGCCCATAGTGGTCCCTTATGCAGCTTTGCTTAAAAAGTTGGATCTTCTCTATGCAATGCTGGATACAGAGGACCATTGTATGTTAATCCAAAGGTGCCCCAACTTGGAAGTCCTTGAGTCAAGGAACGTAATTGGAGACAGAGGATTAGAAGTGCTTGCTCGCTGTTGTAGGAGGCTTAAAAGGCTTCGTATTGAACGAGGTGATGATGATCAAGGGATGGAGGATGAAGAAGGTGTTGTTTCGCAGAGAGGACTAATTGCTTTGTCACATGGCTGTCCAGAACTTGAATACTTAGCCGTTTATGTATCCGACATTACGAATGCATCTCTAGAACACATTGGTGCTCACTTGAAAAAACTCTCTGATTTTCGCCTTGTCTTGCTTGACCGTGAAGAGAAAATAACTGATTTGCCACTTGACAACGGAGTGAGGGCTTTGCTGAGGGGCTGTGACAAGCTCAGAAGATTTGCTCTGTATCTCAGACCTGGGGGCTTGACTGATGTGGGGCTCGGTTACATAGGGCAATACAGCCCAAACGTGAGATGGATGCTTCTTGGTTATGTGGGGGAGACTGATGCAGGGCTTTTGGAATTCTCTAAAGGCTGCCCCAGTCTTCAGAAACTTGAAATGCGAGGATGTTCCTTTTTCAGTGAGTATGCACTAGCTGTTGCTGCAACTCGATTGACTTCTCTCAGGTATCTATGGCAGGAAGAGCCTGTAGTTGTTGAGCATCCAGCTCATATTCTTGCATATTACTCCCTTGCTGGCCCAAGAACAGATTTTCCAGATACTGTTATACCTCTGGATCCTGCAAACTATGTTGACGCGTGA 1665 0.4769 MEDRDARRMTTRLSDVVLDCVMPYIHDPKDRDAVSQVCHRWYELDSLTRKHVTIALCYTTTPDRLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVREISRYFDCLKSLHFRRMIVTDSDLQHLASSRGHVLQALKLDKCSGFSTDGLYYIGRFCRNLRILFLEESSLVENDGDWLHELALNNTVLETLNFYLTDIANIRIQDLELIARNCPNLVSVKITDCEILDLVNFFGHASALEEFCGGSYNEELEYNAIPLPEKLSRLGLTYITKNKMPIVVPYAALLKKLDLLYAMLDTEDHCMLIQRCPNLEVLESRNVIGDRGLEVLARCCRRLKRLRIERGDDDQGMEDEEGVVSQRGLIALSHGCPELEYLAVYVSDITNASLEHIGAHLKKLSDFRLVLLDREEKITDLPLDNGVRALLRGCDKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWMLLGYVGETDAGLLEFSKGCPSLQKLEMRGCSFFSEYALAVAATRLTSLRYLWQEEPVVVEHPAHILAYYSLAGPRTDFPDTVIPLDPANYVDA 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01569 554 PANTHER CORONATINE-INSENSITIVE PROTEIN HOMOLOG 2 7 515 - -
Cca05g01569 554 Pfam F-box 11 51 IPR041567 -
Cca05g01569 554 SUPERFAMILY RNI-like 88 399 - -
Cca05g01569 554 Pfam Transport inhibitor response 1 protein domain 70 116 IPR041101 -
Cca05g01569 554 PANTHER UNCHARACTERIZED 7 515 - -
Cca05g01569 554 SUPERFAMILY RNI-like 363 513 - -
Cca05g01569 554 Gene3D - 1 49 - -
Cca05g01569 554 Gene3D Ribonuclease Inhibitor 50 550 IPR032675 -
Cca05g01569 554 SMART LRR_CC_2 428 454 IPR006553 -
Cca05g01569 554 SMART LRR_CC_2 160 187 IPR006553 -
Cca05g01569 554 SMART LRR_CC_2 310 333 IPR006553 -
Cca05g01569 554 SMART LRR_CC_2 134 159 IPR006553 -
Cca05g01569 554 SMART LRR_CC_2 370 394 IPR006553 -
Cca05g01569 554 SMART LRR_CC_2 480 505 IPR006553 -
Cca05g01569 554 SMART LRR_CC_2 108 132 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01569 Cca-Chr5 34852380 34857846 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01569 K13463 - gmx:100793081 1013.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01569 05 34852380 34857846 Cca05g01569 05 34852380 34857846 ECH
Cca01g00322 01 3631269 3636171 Cca05g01569 05 34852380 34857846 PCT