Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00322 atgaTGTCCCAGGTGTGCCGGCGGTGGTACGAGCTGGACTCCCTCACGAGGAAGCACGTGACCATCGCCCTCTGCTACACGACCACGCCGGCGCGCCTCCGCCGGCGCTTCCCCCACCTGGAGTCCCTGAAGCTGAAGGGGAAGCCCCGCGCCGCAATGTTCAACCTCATACCGGAGGACTGGGGGGGCCACGTCACCCCCTGGGTCGCCGAGATTTCCCGCTACTTCGACTGCCTCAAGACCCTCCACTTCCGCCGCATGATCGTCAAGGATTCCGATCTTCAAATCCTCGCCTCCTCCCGCGGTCACGTGCTCCACGCCCTCAAGCTCGACAAGTGCTCCGGTTTCTCCACTGATGGACTCTCCTTTATTGCTCGCTCTTGCAGGAGTTTAAGAGTCTTGTTTTTGGAGGAAAGCTCAATTGTTGAGAAGGACGGAGAATGGCTACATGAGCTTGCTTTGAATAATACAGTTCTCGAGACTCTCAACTTTTACTTGACAGATATTGATGTGGTCAAGATTCAAGATCTTGAACTCCTAGCTAAAAATTGTCCCAACTTAGTGTCCGTGAAACTCGCCGAATGCGAAATACTGGATCTTGTGAACTTCTTTAAGAATGCCTATGCTCTGGAAGAGTTTTGCGGAGGCACCTACAACGAGGAACCAGAAAAATACTCTGCTATATCACTACCAGCAAAGTTATGTCGATTGGGTTTAACATATATTGGAAAGAATGAGTTGCCCATAGTGTTCATGTTTGCAGCCGTACTAAAAAAATTGGACCTCCTCTATGCAATGCTGGACACGGAGGATCATTGTATGTTAATCCAAAGGTGTCCAAATCTGGAAGTCCTTGAGACAAGGAATGTAATTGGAGATAGAGGGTTAGAAGTTCTTGGCCGTTGTTGTAAGAGGTTAAAAAGGCTTCGGATTGAACGGGGTGATGATGATCAAGGAATGGAGGATGAAGAAGGTACTGTTTCCCATAGAGGGCTGATAGCCTTATCACAAGGGTGTTCGGAGCTTGAATACATGGCAGTTTACGTGTCTGACATTACAAACGCATCTCTGGAACATATTGGAACTCACTTGAAAAACCTGTGTGATTTTCGCCTGGTGTTGCTTGATCACGAAGAAAAGATAACCGATTTGCCACTTGACAATGGAGTGAGGGCTCTACTGAGGGGCTGTGACAAGCTGAGAAGATTTGCCCTATATCTCAGGCGTGGGGGTTTGACTGATGTTGGTCTTGGTTACATTGGTCAGTACAGTCCAAACGTGAGATGGATGCTGCTTGGTTATGTGGGTGAGTCAGATGCAGGACTTTTGGAGTTCTCTAAGGGGTGTCCTAGTCTTCAAAAGCTTGAAATGAGAGGGTGTTCTTTCTTCAGTGAGCGTGCACTTGCTGTGGCAGCAACACAATTGACTTCTCTAAGGTACTTGTGGGTGCAAGGCTATGGTGCATCTCCATCTGGACGTGATCTTTTGGCCATGGCTCGACCCTTTTGGAACATTGAGTTGATTCCTTCTAGAAAAGTGGCTATGAATAACAATACGGATGAGACTGTAGTTGTTGAGCATTCTGCTCACATTCTTGCATATTACTCTCTTGCAGGGCAAAGATCAGATTTTCCTGATACTGTTGTACCTTTGGACACTGTCGCATCTCTTGACGCCTAG 1680 0.4804 MMSQVCRRWYELDSLTRKHVTIALCYTTTPARLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGHVTPWVAEISRYFDCLKTLHFRRMIVKDSDLQILASSRGHVLHALKLDKCSGFSTDGLSFIARSCRSLRVLFLEESSIVEKDGEWLHELALNNTVLETLNFYLTDIDVVKIQDLELLAKNCPNLVSVKLAECEILDLVNFFKNAYALEEFCGGTYNEEPEKYSAISLPAKLCRLGLTYIGKNELPIVFMFAAVLKKLDLLYAMLDTEDHCMLIQRCPNLEVLETRNVIGDRGLEVLGRCCKRLKRLRIERGDDDQGMEDEEGTVSHRGLIALSQGCSELEYMAVYVSDITNASLEHIGTHLKNLCDFRLVLLDHEEKITDLPLDNGVRALLRGCDKLRRFALYLRRGGLTDVGLGYIGQYSPNVRWMLLGYVGESDAGLLEFSKGCPSLQKLEMRGCSFFSERALAVAATQLTSLRYLWVQGYGASPSGRDLLAMARPFWNIELIPSRKVAMNNNTDETVVVEHSAHILAYYSLAGQRSDFPDTVVPLDTVASLDA 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00322 559 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 2 554 - -
Cca01g00322 559 Pfam F-box 3 19 IPR041567 -
Cca01g00322 559 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 2 554 - -
Cca01g00322 559 Gene3D - 1 17 - -
Cca01g00322 559 SUPERFAMILY RNI-like 78 493 - -
Cca01g00322 559 Pfam Transport inhibitor response 1 protein domain 38 84 IPR041101 -
Cca01g00322 559 Gene3D Ribonuclease Inhibitor 18 555 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00322 Cca-Chr1 3631269 3636171 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00322 K13463 - gmx:732662 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00322 01 3631269 3636171 Cca05g01569 05 34852380 34857846 PCT