Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01556 ATGAGCAAAGCCCTTTTCATAGCCCACACCGCAATAGCAGAATGGATAAgctcctggtctacccctgacagATCACCGATCACCGATCAGCGATCCACTGGCTATGAGCTCTTGGTCAGAGGCAACCTGGCGGCGAAGAACAACGTTGTCGTGGATGAGGAGGAGCAGTTGAGCATGGCGCTGCTTTCCGACGTTGAAATCCTCGGAGATGTCGAAATCCCCGACACCGCGCATCAAATCAGCACGGATTCATGGTTTCAAGTGGGGTTTGTGTTGACGACGGGAATCAACAGCGCCTATGTGTTGGGGTATTCGGGGACCATCATGGTGCCGCTGGGTTGGACAGGGGGCGTCCTTGGTTTGATTCTCGCCGCCGCCATATCGCTCTATGCCAATGCTCTCATTGCTAGGCTCCATGAGTTTGGAGGAACCAGGCATATTCGATACAGAGATCTTGCTGGGTTTATATATGGTTCCAAAGCTTATTCCCTCACATGGACTATGCAGTATGTCAATCTTTTCATGATAAATGCCGGCTATATCATTTTGGCTGGTTCCGCTTTAAAGGCTACTTATGTTCTATTTAGGGATGACGATCTAATGAAGCTTCCGTATTTTATTGCCATAGCTGGATTTGTGTGTGCAATGTTTGCCATTTGTATTCCCCATCTATCGGCTCTTGGAACTTGGCTTGGATTTTCAACCGTCTTCAGCCTAGTCTATATTGTTATAGCGTTTGTACTGTCAGTAAGAGATGGTATAAAATCGCCACCTCGTGATTATAGTATTCCGGGGGTTTCAACAAGTAAAATATTTACAACAATTGGGGCCTCTGCTAATCTTGTGTTTGCATATAACACAGGAATGCTTCCTGAGATACAGGCAACCATCAGGCAGCCAGTTGTCAAGAACATGATGAAGTCCCTGTACTTTCAGTTTACCGTTGGAGTTGTGCCATTATTTATGGTAACCTTTGCAGGGTACTGGGCTTATGGATCTTCAACACCAACCTATTTGCTGAGTGATGTCAAAGGTCCAGTTTGGTTGAAGGCCATGGCCAATATTGCAGCCTTTCTTCAATCAGTCATTGCATTGCATATATTTGCGAGTCCAATGTACGAGTATTGGGATACCAAACATGGGATCAAAGGGAGCGCCCTGACTTTGAAGAACTTGTTATTTCGAGTCCTTGTAAGAGGTGGCTACCTGACTTTAAACACATTTGTATCAGCTCTATTGCCATTTCTTGGAGATTTCATGAGCCTCACTGGAGCAATCAGCACATTTCCCCTCACATTTATCCTTGCAAACCATATGTACCTAGTGGCAAATGAGACCAAACTAACATCCATCCAAAAGCTCTGGCATTGGGTCAATATTTGTTTCTTTGCCATCATGTCTGCTGCAGCAACTGTTGCAGCCCTGCGGCTTATTGCTTTAGACTCCAAAACGTATCATCTTTTTGCGGATTTATGA 1476 0.4451 MSKALFIAHTAIAEWISSWSTPDRSPITDQRSTGYELLVRGNLAAKNNVVVDEEEQLSMALLSDVEILGDVEIPDTAHQISTDSWFQVGFVLTTGINSAYVLGYSGTIMVPLGWTGGVLGLILAAAISLYANALIARLHEFGGTRHIRYRDLAGFIYGSKAYSLTWTMQYVNLFMINAGYIILAGSALKATYVLFRDDDLMKLPYFIAIAGFVCAMFAICIPHLSALGTWLGFSTVFSLVYIVIAFVLSVRDGIKSPPRDYSIPGVSTSKIFTTIGASANLVFAYNTGMLPEIQATIRQPVVKNMMKSLYFQFTVGVVPLFMVTFAGYWAYGSSTPTYLLSDVKGPVWLKAMANIAAFLQSVIALHIFASPMYEYWDTKHGIKGSALTLKNLLFRVLVRGGYLTLNTFVSALLPFLGDFMSLTGAISTFPLTFILANHMYLVANETKLTSIQKLWHWVNICFFAIMSAAATVAALRLIALDSKTYHLFADL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01556 491 Pfam Transmembrane amino acid transporter protein 82 471 IPR013057 -
Cca05g01556 491 PANTHER PROLINE TRANSPORTER 1 67 486 - -
Cca05g01556 491 PANTHER OS05G0424000 PROTEIN-RELATED 67 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01556 Cca-Chr5 34762250 34766710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01556 109 491 Organic Solute Cotransporters AT3G55740 74.151 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01556 - - gmx:100816930 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01556 05 34762250 34766710 Cca05g01556 05 34762250 34766710 ECH
Cca01g00339 01 3852846 3855709 Cca05g01556 05 34762250 34766710 PCT